Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL18A1P39060 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.99□□□□□ -1.45
COL18A1P39060 Z98745.1-201ENST00000402553 494 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.98□□□□□ -1.45
COL18A1P39060 BTF3P6-201ENST00000448054 499 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL18A1P39060 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.98□□□□□ -1.45
COL18A1P39060 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.98□□□□□ -1.45
COL18A1P39060 AC006349.1-201ENST00000555526 235 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 AC091979.2-201ENST00000607514 214 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 AC099676.1-201ENST00000608886 657 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL18A1P39060 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL18A1P39060 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL18A1P39060 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.98□□□□□ -1.45
COL18A1P39060 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL18A1P39060 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL18A1P39060 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 AL360270.2-201ENST00000562952 5985 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 AL356276.2-201ENST00000435919 558 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.98□□□□□ -1.45
COL18A1P39060 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.98□□□□□ -1.45
COL18A1P39060 MIR4444-1-201ENST00000581696 74 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 MIR4444-2-201ENST00000584390 74 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.98□□□□□ -1.45
COL18A1P39060 AC023043.4-201ENST00000612081 449 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 uc_338.13-201ENST00000618243 179 ntBASIC5.98□□□□□ -1.45
COL18A1P39060 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.98□□□□□ -1.45
COL18A1P39060 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.97□□□□□ -1.45
COL18A1P39060 AC092451.3-201ENST00000625067 1343 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 AC018628.1-201ENST00000624147 3819 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL18A1P39060 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.97□□□□□ -1.45
COL18A1P39060 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL18A1P39060 RPL21P65-201ENST00000406094 466 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 AMZ2P2-201ENST00000406819 1057 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 SNORA11F-201ENST00000408237 128 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 RPL21P43-201ENST00000425440 472 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 RPL35AP21-201ENST00000437667 333 ntBASIC5.97□□□□□ -1.45
COL18A1P39060 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.97□□□□□ -1.45
COL18A1P39060 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.97□□□□□ -1.45
COL18A1P39060 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.97□□□□□ -1.45
COL18A1P39060 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL18A1P39060 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.96□□□□□ -1.45
COL18A1P39060 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
COL18A1P39060 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL18A1P39060 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL18A1P39060 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL18A1P39060 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.96□□□□□ -1.46
COL18A1P39060 AC053481.3-201ENST00000577881 843 ntBASIC5.96□□□□□ -1.46
COL18A1P39060 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.96□□□□□ -1.46
COL18A1P39060 MAPK10-372ENST00000641954 3413 ntBASIC5.96□□□□□ -1.46
COL18A1P39060 AC017104.4-201ENST00000636283 1592 ntBASIC5.96□□□□□ -1.46
COL18A1P39060 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL18A1P39060 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL18A1P39060 AP001029.2-203ENST00000589795 4910 ntBASIC5.96□□□□□ -1.46
COL18A1P39060 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL18A1P39060 ADAM24P-201ENST00000398655 2101 ntBASIC5.96□□□□□ -1.46
COL18A1P39060 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.95□□□□□ -1.46
COL18A1P39060 Z74021.1-201ENST00000423610 407 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.95□□□□□ -1.46
COL18A1P39060 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.95□□□□□ -1.46
COL18A1P39060 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.95□□□□□ -1.46
COL18A1P39060 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 AC039056.2-201ENST00000622261 511 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.95□□□□□ -1.46
COL18A1P39060 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
COL18A1P39060 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.95□□□□□ -1.46
COL18A1P39060 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.95□□□□□ -1.46
COL18A1P39060 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC5.95□□□□□ -1.46
COL18A1P39060 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL18A1P39060 MIR208A-201ENST00000362287 71 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 PCNPP4-201ENST00000414817 517 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.95□□□□□ -1.46
COL18A1P39060 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.95□□□□□ -1.46
COL18A1P39060 AC104651.2-201ENST00000447549 528 ntBASIC5.95□□□□□ -1.46
COL18A1P39060 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms