Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 RNU6-697P-201ENST00000363348 107 ntBASIC4.27□□□□□ -1.73
USF1P22415 RN7SKP113-201ENST00000363891 295 ntBASIC4.27□□□□□ -1.73
USF1P22415 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 AL021331.1-201ENST00000402817 582 ntBASIC4.27□□□□□ -1.73
USF1P22415 RNU2-50P-201ENST00000410494 143 ntBASIC4.27□□□□□ -1.73
USF1P22415 AC092017.2-201ENST00000427600 362 ntBASIC4.27□□□□□ -1.73
USF1P22415 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 AL137845.2-201ENST00000444292 988 ntBASIC4.27□□□□□ -1.73
USF1P22415 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.27□□□□□ -1.73
USF1P22415 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.27□□□□□ -1.73
USF1P22415 RPL7P41-201ENST00000485823 957 ntBASIC4.27□□□□□ -1.73
USF1P22415 BTF3P13-201ENST00000513224 490 ntBASIC4.27□□□□□ -1.73
USF1P22415 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.27□□□□□ -1.73
USF1P22415 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 AC027369.5-201ENST00000533838 755 ntBASIC4.27□□□□□ -1.73
USF1P22415 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.27□□□□□ -1.73
USF1P22415 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.27□□□□□ -1.73
USF1P22415 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.27□□□□□ -1.73
USF1P22415 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.27□□□□□ -1.73
USF1P22415 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 AC079075.1-201ENST00000559543 878 ntBASIC4.27□□□□□ -1.73
USF1P22415 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.27□□□□□ -1.73
USF1P22415 AC040958.1-201ENST00000561102 201 ntBASIC4.27□□□□□ -1.73
USF1P22415 AC122134.1-201ENST00000565664 1104 ntBASIC4.27□□□□□ -1.73
USF1P22415 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.27□□□□□ -1.73
USF1P22415 MIR4675-201ENST00000577898 77 ntBASIC4.27□□□□□ -1.73
USF1P22415 MIR4737-201ENST00000583979 81 ntBASIC4.27□□□□□ -1.73
USF1P22415 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.27□□□□□ -1.73
USF1P22415 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.27□□□□□ -1.73
USF1P22415 AC008814.1-201ENST00000603797 406 ntBASIC4.27□□□□□ -1.73
USF1P22415 MEMO1P5-201ENST00000604810 406 ntBASIC4.27□□□□□ -1.73
USF1P22415 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.27□□□□□ -1.73
USF1P22415 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USF1P22415 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
USF1P22415 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.26□□□□□ -1.73
USF1P22415 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USF1P22415 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.26□□□□□ -1.73
USF1P22415 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 RNA5SP223-201ENST00000365174 120 ntBASIC4.26□□□□□ -1.73
USF1P22415 RNU1-74P-201ENST00000384108 171 ntBASIC4.26□□□□□ -1.73
USF1P22415 RAB28P1-201ENST00000411517 641 ntBASIC4.26□□□□□ -1.73
USF1P22415 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 AC092447.2-201ENST00000435487 669 ntBASIC4.26□□□□□ -1.73
USF1P22415 TMX2P1-201ENST00000436507 708 ntBASIC4.26□□□□□ -1.73
USF1P22415 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 RPL34P20-201ENST00000442771 351 ntBASIC4.26□□□□□ -1.73
USF1P22415 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 CYCSP24-201ENST00000445119 316 ntBASIC4.26□□□□□ -1.73
USF1P22415 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 OR6C72P-201ENST00000451403 892 ntBASIC4.26□□□□□ -1.73
USF1P22415 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 RN7SL481P-201ENST00000477764 299 ntBASIC4.26□□□□□ -1.73
USF1P22415 RN7SL814P-201ENST00000487715 300 ntBASIC4.26□□□□□ -1.73
USF1P22415 RN7SL346P-201ENST00000491561 294 ntBASIC4.26□□□□□ -1.73
USF1P22415 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.26□□□□□ -1.73
USF1P22415 RAB9BP1-201ENST00000519581 626 ntBASIC4.26□□□□□ -1.73
USF1P22415 HNRNPRP2-201ENST00000528421 743 ntBASIC4.26□□□□□ -1.73
USF1P22415 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.26□□□□□ -1.73
USF1P22415 AC084759.1-201ENST00000561168 290 ntBASIC4.26□□□□□ -1.73
USF1P22415 AC018552.1-201ENST00000562099 811 ntBASIC4.26□□□□□ -1.73
USF1P22415 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.26□□□□□ -1.73
USF1P22415 MIR3936-201ENST00000584304 110 ntBASIC4.26□□□□□ -1.73
USF1P22415 AC234771.5-201ENST00000600161 514 ntBASIC4.26□□□□□ -1.73
USF1P22415 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
USF1P22415 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.26□□□□□ -1.73
USF1P22415 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
USF1P22415 AC000123.3-201ENST00000624029 4975 ntBASIC4.25□□□□□ -1.73
USF1P22415 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms