Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL6A1P12109 THAP12P9-201ENST00000503971 2360 ntBASIC6.4□□□□□ -1.39
COL6A1P12109 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL6A1P12109 MTND4P34-201ENST00000572715 1371 ntBASIC6.4□□□□□ -1.39
COL6A1P12109 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.4□□□□□ -1.39
COL6A1P12109 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL6A1P12109 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL6A1P12109 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.4□□□□□ -1.39
COL6A1P12109 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL6A1P12109 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL6A1P12109 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
COL6A1P12109 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 RNA5SP305-201ENST00000362665 119 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 U3.2-201ENST00000362981 210 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 RNU1-77P-201ENST00000390868 162 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AL034374.1-201ENST00000406329 351 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC022028.1-201ENST00000412054 408 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 FAR2P2-201ENST00000413041 594 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 OR5W1P-201ENST00000423705 938 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 FAR2P4-202ENST00000425399 584 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AL160175.1-201ENST00000428124 247 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC007563.3-201ENST00000433233 371 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC090018.1-201ENST00000434369 367 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 CYCSP6-201ENST00000434498 302 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 MTND2P4-201ENST00000445034 1004 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 AZGP1P2-201ENST00000454506 345 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 BX284632.1-201ENST00000478218 541 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 RPS3AP43-201ENST00000479743 781 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 RPL7AP10-201ENST00000481016 791 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 RN7SL570P-201ENST00000484405 292 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC079203.1-201ENST00000487972 404 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 CEACAMP10-202ENST00000495431 496 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC091860.1-201ENST00000505723 432 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 BTG4P1-201ENST00000510421 183 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 MTND2P26-201ENST00000528255 1029 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC007494.1-201ENST00000562293 760 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 AL035411.2-201ENST00000604022 421 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC023813.4-201ENST00000607580 580 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AC126915.2-201ENST00000610957 190 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AL356274.1-201ENST00000617064 410 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 AP000676.3-201ENST00000623299 569 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 UGP2-231ENST00000627474 264 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC006927.3-201ENST00000638789 384 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL6A1P12109 AC027228.2-201ENST00000567141 2154 ntBASIC6.39□□□□□ -1.39
COL6A1P12109 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL6A1P12109 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.39□□□□□ -1.39
COL6A1P12109 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL6A1P12109 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms