Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
TREX1Q9NSU2 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TREX1Q9NSU2 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
TREX1Q9NSU2 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TREX1Q9NSU2 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TREX1Q9NSU2 AL031119.1-201ENST00000404707 1879 ntBASIC4.75□□□□□ -1.65
TREX1Q9NSU2 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AL109941.1-201ENST00000401925 229 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AL080315.1-201ENST00000406055 466 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 SPTLC1P2-201ENST00000407089 121 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 RN7SKP247-201ENST00000411094 308 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 OR2B7P-201ENST00000429302 934 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AP000942.1-201ENST00000463969 747 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AGGF1P3-201ENST00000493675 1213 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC111000.5-201ENST00000506559 1178 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC147055.3-201ENST00000510547 851 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AP002981.1-201ENST00000517692 975 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC105129.1-201ENST00000560250 297 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC093591.2-201ENST00000565254 3843 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC015912.2-201ENST00000571053 181 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC096553.1-201ENST00000605169 829 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AP000894.4-201ENST00000610185 483 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 PCAT14-202ENST00000627127 3935 ntBASIC4.74□□□□□ -1.65
TREX1Q9NSU2 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TREX1Q9NSU2 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC021242.1-201ENST00000507315 2035 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AL442639.1-201ENST00000625030 1899 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 SNORA51.8-201ENST00000384234 132 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 RNU1-82P-201ENST00000390851 165 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 RN7SKP125-201ENST00000410481 302 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC079168.2-201ENST00000453977 416 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC004453.1-201ENST00000487895 408 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 RPS4XP14-201ENST00000493072 781 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 RN7SL591P-201ENST00000496150 292 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC018442.3-201ENST00000523025 183 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC009117.1-201ENST00000563948 554 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 BGLT3-201ENST00000564523 994 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC097505.1-201ENST00000610199 565 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 SDR42E1P1-201ENST00000611327 477 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AL359757.1-201ENST00000623176 255 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 AC011815.3-201ENST00000624194 473 ntBASIC4.73□□□□□ -1.65
TREX1Q9NSU2 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TREX1Q9NSU2 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TREX1Q9NSU2 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TREX1Q9NSU2 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms