Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC42Q96M95 U3.30-201ENST00000391308 210 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 HMGB3P7-201ENST00000400214 611 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 HDGFP1-201ENST00000405943 252 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 RPL21P43-201ENST00000425440 472 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC002069.1-201ENST00000429649 1159 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 THAP12P8-201ENST00000447914 2115 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 ZFRP1-201ENST00000457579 2970 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 ATP5G1P3-201ENST00000463301 410 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC025164.1-201ENST00000496249 478 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC42Q96M95 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC027455.1-201ENST00000574104 594 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC006116.3-201ENST00000592968 361 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC011453.2-201ENST00000603737 729 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC087283.1-201ENST00000604029 1074 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC073137.1-201ENST00000605636 634 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC008966.2-201ENST00000606157 453 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AL008729.2-201ENST00000606393 473 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 AC004808.2-201ENST00000627965 773 ntBASIC5.04□□□□□ -1.6
CCDC42Q96M95 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC42Q96M95 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC42Q96M95 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 RN7SKP115-201ENST00000363177 317 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 RNU1-82P-201ENST00000390851 165 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AL391361.1-201ENST00000405580 489 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 RPL12P43-201ENST00000420608 499 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 CHEK2P5-201ENST00000423877 246 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 AL391987.1-201ENST00000441025 200 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC090142.1-201ENST00000465776 462 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 BX284632.1-201ENST00000478218 541 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC091868.1-201ENST00000508746 304 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 SLC25A36P1-201ENST00000590111 465 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 AL133406.3-201ENST00000606817 541 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 OR7A19P-201ENST00000608051 733 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 FAM27B-201ENST00000610601 213 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 AC027228.2-201ENST00000567141 2154 ntBASIC5.03□□□□□ -1.6
CCDC42Q96M95 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC42Q96M95 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC42Q96M95 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC42Q96M95 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC42Q96M95 NCLP2-201ENST00000416078 1462 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC42Q96M95 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 RN7SKP104-201ENST00000362605 328 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 RPS24P12-201ENST00000402084 394 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AC079168.2-201ENST00000453977 416 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 RPL7L1P4-201ENST00000513004 707 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 RNA5SP446-201ENST00000515955 82 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 RN7SKP147-201ENST00000517154 244 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 IGLVIV-64-201ENST00000518581 301 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC42Q96M95 AC011445.2-201ENST00000599274 173 ntBASIC5.02□□□□□ -1.61
CCDC42Q96M95 RPL7P50-201ENST00000600588 727 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms