Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AL121657.1-201ENST00000327215 531 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 MIR383-201ENST00000362257 73 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 CEACAMP8-201ENST00000413902 580 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 AC012409.3-201ENST00000611343 981 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 ZFRP1-201ENST00000457579 2970 ntBASIC5.83□□□□□ -1.48
CCDC88AQ3V6T2 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 PCAT14-202ENST00000627127 3935 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 VN1R37P-201ENST00000419096 748 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 MRPS21P3-201ENST00000436696 262 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AL049874.2-201ENST00000492636 288 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 MYL12BP2-201ENST00000503948 512 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 OR8A2P-201ENST00000528631 952 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 RN7SL652P-201ENST00000577769 300 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AC090948.1-201ENST00000607464 549 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 U3.53-201ENST00000628922 216 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 AC125257.1-201ENST00000560400 2930 ntBASIC5.82□□□□□ -1.48
CCDC88AQ3V6T2 RN7SKP224-201ENST00000364140 325 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 SNORA70C-201ENST00000384538 135 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 OR1F12-201ENST00000402365 945 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AL357515.1-201ENST00000402967 542 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 PCNPP4-201ENST00000414817 517 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AL356387.2-201ENST00000422272 243 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RPL7AP25-201ENST00000423357 805 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 VTI1BP4-201ENST00000427516 527 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RPS29P17-201ENST00000430795 166 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RN7SL542P-201ENST00000467147 294 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 NPM1P28-201ENST00000492269 840 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AC108475.1-201ENST00000507880 950 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 SAP18P1-201ENST00000512058 390 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RNU1-6P-201ENST00000516290 144 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AGGF1P9-201ENST00000561884 913 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AC090948.2-201ENST00000607363 564 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AL023881.1-201ENST00000621088 301 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 SNORA71.2-201ENST00000364941 134 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 SNORA11F-201ENST00000408237 128 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 CASKP1-201ENST00000412870 582 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AP005901.4-201ENST00000577336 569 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 AC022916.3-201ENST00000592961 742 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC88AQ3V6T2 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 DHX9P1-201ENST00000436565 3076 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms