Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC244505.3-201ENST00000454598 187 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AP000563.1-201ENST00000490865 758 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RN7SL466P-201ENST00000497546 295 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC105313.1-201ENST00000509121 353 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 HMGB1P1-201ENST00000522557 636 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MRPS16P1-201ENST00000523462 412 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PMS2P3-207ENST00000529061 717 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MTCO2P15-201ENST00000532655 656 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC027104.1-201ENST00000563702 681 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MIR4489-201ENST00000578869 62 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MIR4311-201ENST00000580794 100 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 LSM1P2-201ENST00000604911 322 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC011815.3-201ENST00000624194 473 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL691477.1-201ENST00000624398 162 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC005618.4-201ENST00000625053 554 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 LINC01808-202ENST00000641680 1116 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 VN2R3P-201ENST00000422626 1412 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RARSP1-201ENST00000542842 1418 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 AC009962.1-201ENST00000567327 3813 ntBASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
PTCHD3Q3KNS1 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 GAPDHP24-201ENST00000328713 983 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 Y_RNA.578-201ENST00000390903 88 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 OR6E1P-201ENST00000414424 923 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 REREP1Y-201ENST00000422655 198 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC099670.2-201ENST00000435130 321 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 FMO7P-201ENST00000436045 768 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 REREP2Y-201ENST00000439103 200 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 RPS26P39-201ENST00000469206 341 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 ATP5LP5-201ENST00000483050 299 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC004815.1-201ENST00000484185 331 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 EIF3LP3-201ENST00000495197 822 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 ATP5LP3-201ENST00000514223 304 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 DEFB130C-202ENST00000530001 230 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 OR5AM1P-201ENST00000532136 1032 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 IGBP1P1-201ENST00000554337 1009 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AL049872.1-201ENST00000556323 322 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC095057.3-201ENST00000567102 1157 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC061975.8-201ENST00000587058 721 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AP002884.5-201ENST00000595053 1132 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC013444.2-201ENST00000603317 787 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC013468.1-201ENST00000608680 598 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC008115.3-201ENST00000614874 549 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC112694.2-201ENST00000623697 768 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 OR1S1-201ENST00000624470 978 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AL390318.1-201ENST00000624564 687 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms