Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.71□□□□□ -1.33
SOX4Q06945 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SOX4Q06945 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SOX4Q06945 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 AC005618.1-201ENST00000606901 3148 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC017104.4-201ENST00000636283 1592 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC093225.1-201ENST00000506867 1408 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
SOX4Q06945 TMSB4XP4-201ENST00000323496 618 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 SNORA4.1-201ENST00000364263 144 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 AC004386.1-201ENST00000393214 761 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 ATP5HP3-201ENST00000396994 486 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 RN7SKP144-201ENST00000411108 279 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 MTCYBP24-201ENST00000420387 1106 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 AL353662.1-201ENST00000439099 327 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 ARL5AP2-201ENST00000444698 533 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC005002.1-201ENST00000447458 540 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 Z99127.3-201ENST00000448158 395 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 MTCO3P11-201ENST00000455103 774 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 RANP2-201ENST00000456833 229 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC009963.3-201ENST00000458090 486 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 SNX18P26-201ENST00000458433 740 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC068228.1-201ENST00000461723 211 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 MTND1P16-201ENST00000465177 898 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 AP000852.1-201ENST00000472460 573 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 AC091951.2-201ENST00000500762 203 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC093824.1-201ENST00000508796 343 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 ARL2BPP6-201ENST00000512757 439 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 RNU6-875P-201ENST00000516488 106 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 RNA5SP434-201ENST00000516647 121 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 OR5AK3P-201ENST00000527486 1297 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 OR7K1P-201ENST00000546439 926 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.71□□□□□ -1.34
SOX4Q06945 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 MTCO3P13-201ENST00000577757 781 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.71□□□□□ -1.34
SOX4Q06945 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 AL354760.1-201ENST00000608357 643 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC006924.1-201ENST00000610750 559 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC023158.2-201ENST00000614876 543 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AC069209.1-201ENST00000619282 651 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 FAM27E2-201ENST00000619668 403 ntBASIC6.71□□□□□ -1.34
SOX4Q06945 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.71□□□□□ -1.34
SOX4Q06945 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.71□□□□□ -1.34
SOX4Q06945 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
SOX4Q06945 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
SOX4Q06945 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SOX4Q06945 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.71□□□□□ -1.34
SOX4Q06945 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.7□□□□□ -1.34
SOX4Q06945 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.7□□□□□ -1.34
SOX4Q06945 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.7□□□□□ -1.34
SOX4Q06945 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
SOX4Q06945 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SOX4Q06945 METTL21EP-201ENST00000298105 713 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 CBX3P1-201ENST00000325243 554 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 SNORA21-201ENST00000362423 132 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 RNA5SP478-201ENST00000364657 115 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.7□□□□□ -1.34
SOX4Q06945 HMGB3P18-201ENST00000406327 590 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.7□□□□□ -1.34
SOX4Q06945 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.7□□□□□ -1.34
SOX4Q06945 AC079807.1-201ENST00000429993 481 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 IGLV3-4-201ENST00000432300 244 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.7□□□□□ -1.34
SOX4Q06945 AC092427.1-201ENST00000439177 601 ntBASIC6.7□□□□□ -1.34
SOX4Q06945 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.7□□□□□ -1.34
SOX4Q06945 TRIM60P16-201ENST00000444048 694 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms