Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.13□□□□□ -1.43
RNF4P78317 AKAP17BP-201ENST00000431706 2719 ntBASIC6.12□□□□□ -1.43
RNF4P78317 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 AC010168.2-201ENST00000562691 5428 ntBASIC6.12□□□□□ -1.43
RNF4P78317 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 IGKV7-3-201ENST00000357453 298 ntBASIC6.12□□□□□ -1.43
RNF4P78317 Y_RNA.70-201ENST00000362886 110 ntBASIC6.12□□□□□ -1.43
RNF4P78317 RNU1-24P-201ENST00000364285 165 ntBASIC6.12□□□□□ -1.43
RNF4P78317 RNA5SP85-201ENST00000365378 119 ntBASIC6.12□□□□□ -1.43
RNF4P78317 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 MRPS6P2-201ENST00000381143 370 ntBASIC6.12□□□□□ -1.43
RNF4P78317 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 MIR640-201ENST00000385086 96 ntBASIC6.12□□□□□ -1.43
RNF4P78317 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 RN7SKP222-201ENST00000410651 315 ntBASIC6.12□□□□□ -1.43
RNF4P78317 RN7SKP263-201ENST00000411194 309 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 AL359092.1-201ENST00000417156 265 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AL109913.1-201ENST00000421173 514 ntBASIC6.12□□□□□ -1.43
RNF4P78317 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.12□□□□□ -1.43
RNF4P78317 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 AL831737.1-201ENST00000441288 271 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 RPS18P1-201ENST00000447840 458 ntBASIC6.12□□□□□ -1.43
RNF4P78317 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.12□□□□□ -1.43
RNF4P78317 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 AC092989.1-201ENST00000481235 277 ntBASIC6.12□□□□□ -1.43
RNF4P78317 RN7SL413P-201ENST00000482700 297 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AL035404.1-201ENST00000497982 568 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC093870.1-201ENST00000506837 213 ntBASIC6.12□□□□□ -1.43
RNF4P78317 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.12□□□□□ -1.43
RNF4P78317 SUMO2P7-201ENST00000511179 285 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC074344.1-201ENST00000512823 224 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC138517.1-201ENST00000515724 568 ntBASIC6.12□□□□□ -1.43
RNF4P78317 RNA5SP135-201ENST00000517019 125 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.12□□□□□ -1.43
RNF4P78317 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 OR8A2P-201ENST00000528631 952 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AP002748.2-201ENST00000528671 348 ntBASIC6.12□□□□□ -1.43
RNF4P78317 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 AC124947.2-202ENST00000552735 133 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.12□□□□□ -1.43
RNF4P78317 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 AP001004.1-201ENST00000582468 324 ntBASIC6.12□□□□□ -1.43
RNF4P78317 KPNA2P3-201ENST00000584190 848 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC015818.6-201ENST00000584274 634 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 AC091834.1-201ENST00000614543 472 ntBASIC6.12□□□□□ -1.43
RNF4P78317 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 AL442128.2-201ENST00000620246 1824 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AL355377.1-201ENST00000621125 1653 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC007012.2-201ENST00000623206 1676 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC145207.9-201ENST00000623802 325 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AP000648.2-201ENST00000624182 404 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AC073488.9-201ENST00000631601 754 ntBASIC6.12□□□□□ -1.43
RNF4P78317 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.12□□□□□ -1.43
RNF4P78317 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
RNF4P78317 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 AL136531.3-201ENST00000624378 3658 ntBASIC6.12□□□□□ -1.43
RNF4P78317 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
RNF4P78317 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 AC093311.1-201ENST00000506586 2021 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC073365.1-203ENST00000641055 1992 ntBASIC6.11□□□□□ -1.43
RNF4P78317 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.11□□□□□ -1.43
RNF4P78317 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
RNF4P78317 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
RNF4P78317 RNU6-582P-201ENST00000362989 107 ntBASIC6.11□□□□□ -1.43
RNF4P78317 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 MIR191-201ENST00000384873 92 ntBASIC6.11□□□□□ -1.43
RNF4P78317 USP9YP6-201ENST00000413550 854 ntBASIC6.11□□□□□ -1.43
RNF4P78317 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms