Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PHBP16-201ENST00000446318 950 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 AC116533.1-201ENST00000459748 321 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.04□□□□□ -1.6
COL4A4P53420 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.04□□□□□ -1.6
COL4A4P53420 TRAV8-5-201ENST00000537369 341 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.04□□□□□ -1.6
COL4A4P53420 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.04□□□□□ -1.6
COL4A4P53420 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.04□□□□□ -1.6
COL4A4P53420 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.04□□□□□ -1.6
COL4A4P53420 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC5.04□□□□□ -1.6
COL4A4P53420 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 AP000432.2-201ENST00000624164 2048 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.03□□□□□ -1.6
COL4A4P53420 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.03□□□□□ -1.6
COL4A4P53420 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 MIR208A-201ENST00000362287 71 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.03□□□□□ -1.6
COL4A4P53420 RPL36AP36-201ENST00000418616 301 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.03□□□□□ -1.6
COL4A4P53420 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.03□□□□□ -1.6
COL4A4P53420 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.03□□□□□ -1.6
COL4A4P53420 RN7SL542P-201ENST00000467147 294 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.03□□□□□ -1.6
COL4A4P53420 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.03□□□□□ -1.6
COL4A4P53420 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.03□□□□□ -1.6
COL4A4P53420 MTND4LP2-201ENST00000502312 285 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.03□□□□□ -1.6
COL4A4P53420 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.03□□□□□ -1.6
COL4A4P53420 RN7SL176P-201ENST00000580352 264 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 AC025574.1-201ENST00000554784 1653 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
COL4A4P53420 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.03□□□□□ -1.6
COL4A4P53420 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL4A4P53420 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 OR14L1P-202ENST00000641545 3009 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 RNU1-94P-201ENST00000362627 173 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 RN7SKP224-201ENST00000364140 325 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.02□□□□□ -1.61
COL4A4P53420 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.02□□□□□ -1.61
COL4A4P53420 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.02□□□□□ -1.61
COL4A4P53420 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.02□□□□□ -1.61
COL4A4P53420 AC108475.1-201ENST00000507880 950 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.02□□□□□ -1.61
COL4A4P53420 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 AL121950.1-201ENST00000624993 2077 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.02□□□□□ -1.61
COL4A4P53420 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 AC090017.1-201ENST00000548612 1779 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.02□□□□□ -1.61
COL4A4P53420 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL4A4P53420 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 MIR383-201ENST00000362257 73 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AP001324.1-201ENST00000428553 399 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.02□□□□□ -1.61
COL4A4P53420 AC108463.1-201ENST00000450258 347 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 SNRPCP3-201ENST00000474888 476 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 SCARNA13-201ENST00000516672 275 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.02□□□□□ -1.61
COL4A4P53420 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.02□□□□□ -1.61
COL4A4P53420 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.02□□□□□ -1.61
COL4A4P53420 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.02□□□□□ -1.61
COL4A4P53420 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.02□□□□□ -1.61
COL4A4P53420 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 RN7SL703P-201ENST00000578485 302 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AC006130.2-201ENST00000586202 326 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.02□□□□□ -1.61
COL4A4P53420 AL049536.1-201ENST00000625043 744 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 MIR492-201ENST00000638676 116 ntBASIC5.02□□□□□ -1.61
COL4A4P53420 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL4A4P53420 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
COL4A4P53420 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC5.01□□□□□ -1.61
COL4A4P53420 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms