Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC090888.2-201ENST00000559765 1144 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC068313.1-201ENST00000604028 1008 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AL450336.1-201ENST00000605180 586 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RNU4-5P-201ENST00000607255 135 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC019131.2-201ENST00000609071 870 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 uc_338.29-201ENST00000615099 168 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC048344.4-201ENST00000619744 527 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AL023881.1-201ENST00000621088 301 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXA1P49639 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXA1P49639 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXA1P49639 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC4.54□□□□□ -1.68
HOXA1P49639 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 AC027088.4-201ENST00000611559 1947 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 SSXP3-201ENST00000442971 1300 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HOXA1P49639 MIR137-201ENST00000385223 102 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AP002784.2-201ENST00000397300 549 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC013442.1-201ENST00000397347 228 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 GCNT1P4-201ENST00000404096 329 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 RN7SKP86-201ENST00000410454 332 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 RNU4-74P-201ENST00000411280 161 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 PCNPP4-201ENST00000414817 517 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA1P49639 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 PCBP2P1-201ENST00000437262 977 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 RPL6P5-201ENST00000445678 828 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 IGBP1P3-201ENST00000447449 1000 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AL096803.2-201ENST00000450032 677 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 MTND2P8-201ENST00000450555 1025 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC009963.3-201ENST00000458090 486 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 RPS20P4-201ENST00000461659 355 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 HMGB3P16-201ENST00000508037 287 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 SCARNA18.1-201ENST00000516330 83 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 EEF1A1P37-201ENST00000522748 715 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC087888.1-201ENST00000550884 1254 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AL132857.1-201ENST00000555180 708 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC006349.1-201ENST00000555526 235 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXA1P49639 MIR4789-201ENST00000577469 82 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 MTCYBP13-201ENST00000578634 1093 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC090236.2-201ENST00000587933 1101 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 AL365400.2-201ENST00000605604 902 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AP002802.2-201ENST00000605877 235 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXA1P49639 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC079395.3-201ENST00000615161 484 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 AC009237.17-201ENST00000618111 748 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AP004607.9-201ENST00000618202 316 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC011815.3-201ENST00000624194 473 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXA1P49639 AC073869.10-201ENST00000642016 354 ntBASIC4.53□□□□□ -1.68
HOXA1P49639 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
HOXA1P49639 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXA1P49639 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HOXA1P49639 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
HOXA1P49639 PDZK1P1-202ENST00000425209 1350 ntBASIC4.53□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms