Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
MSX2P35548 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 RNU6-353P-201ENST00000364266 108 ntBASIC5.64□□□□□ -1.51
MSX2P35548 MIR137-201ENST00000385223 102 ntBASIC5.64□□□□□ -1.51
MSX2P35548 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
MSX2P35548 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 AL096829.1-201ENST00000413677 457 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 AC027644.1-201ENST00000419595 298 ntBASIC5.64□□□□□ -1.51
MSX2P35548 RPS15AP30-201ENST00000420976 390 ntBASIC5.64□□□□□ -1.51
MSX2P35548 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 DPRXP1-201ENST00000426312 460 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 GAPDHP34-201ENST00000432112 823 ntBASIC5.64□□□□□ -1.51
MSX2P35548 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 GTF3AP5-201ENST00000442645 697 ntBASIC5.64□□□□□ -1.51
MSX2P35548 RPS23P9-201ENST00000448848 438 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 RN7SL372P-201ENST00000461982 298 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC011979.1-201ENST00000472300 483 ntBASIC5.64□□□□□ -1.51
MSX2P35548 SETP11-201ENST00000473027 690 ntBASIC5.64□□□□□ -1.51
MSX2P35548 RN7SL836P-201ENST00000476140 296 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC079080.1-201ENST00000479841 822 ntBASIC5.64□□□□□ -1.51
MSX2P35548 RN7SL267P-201ENST00000485107 261 ntBASIC5.64□□□□□ -1.51
MSX2P35548 PDCL3P4-201ENST00000489621 720 ntBASIC5.64□□□□□ -1.51
MSX2P35548 RPS6P4-201ENST00000494693 758 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.64□□□□□ -1.51
MSX2P35548 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 OR9G2P-201ENST00000533326 880 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
MSX2P35548 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 CHEK2P2-201ENST00000554701 672 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 ZNF322P1-201ENST00000568013 1209 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.64□□□□□ -1.51
MSX2P35548 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.64□□□□□ -1.51
MSX2P35548 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 HTR1DP1-201ENST00000616500 888 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.64□□□□□ -1.51
MSX2P35548 LINC01808-202ENST00000641680 1116 ntBASIC5.64□□□□□ -1.51
MSX2P35548 AC009220.2-201ENST00000489759 1751 ntBASIC5.64□□□□□ -1.51
MSX2P35548 MAPK10-328ENST00000641553 4009 ntBASIC5.64□□□□□ -1.51
MSX2P35548 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 MTCO1P18-201ENST00000455518 1419 ntBASIC5.64□□□□□ -1.51
MSX2P35548 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 AC073429.2-201ENST00000569694 1444 ntBASIC5.64□□□□□ -1.51
MSX2P35548 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5.64□□□□□ -1.51
MSX2P35548 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSX2P35548 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX2P35548 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 AC093671.1-201ENST00000624981 2929 ntBASIC5.63□□□□□ -1.51
MSX2P35548 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
MSX2P35548 AL391994.1-201ENST00000254724 282 ntBASIC5.63□□□□□ -1.51
MSX2P35548 OR56B2P-201ENST00000317102 954 ntBASIC5.63□□□□□ -1.51
MSX2P35548 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
MSX2P35548 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 RNU105B-201ENST00000364478 208 ntBASIC5.63□□□□□ -1.51
MSX2P35548 snoZ40.1-201ENST00000364540 72 ntBASIC5.63□□□□□ -1.51
MSX2P35548 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
MSX2P35548 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
MSX2P35548 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 MT-TH-201ENST00000387441 69 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC026310.1-201ENST00000396004 378 ntBASIC5.63□□□□□ -1.51
MSX2P35548 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 AL034417.1-201ENST00000399343 800 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AL034403.1-201ENST00000399414 885 ntBASIC5.63□□□□□ -1.51
MSX2P35548 RN7SKP205-201ENST00000410999 307 ntBASIC5.63□□□□□ -1.51
MSX2P35548 RNA5SP155-201ENST00000411154 129 ntBASIC5.63□□□□□ -1.51
MSX2P35548 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC010385.1-201ENST00000412374 256 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms