Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.26□□□□□ -1.41
HOXC9P31274 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.26□□□□□ -1.41
HOXC9P31274 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC9P31274 AC125257.1-201ENST00000560400 2930 ntBASIC6.26□□□□□ -1.41
HOXC9P31274 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.26□□□□□ -1.41
HOXC9P31274 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.25□□□□□ -1.41
HOXC9P31274 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
HOXC9P31274 TET1P1-201ENST00000426627 2301 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 RPL23AP59-201ENST00000399415 461 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC6.25□□□□□ -1.41
HOXC9P31274 VN1R37P-201ENST00000419096 748 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 RPL7AP25-201ENST00000423357 805 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 GTF2IP2-201ENST00000424290 697 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 NPM1P48-201ENST00000436002 853 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 CBX1P1-201ENST00000440184 427 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC6.25□□□□□ -1.41
HOXC9P31274 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.25□□□□□ -1.41
HOXC9P31274 AC093840.1-201ENST00000511599 336 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 RNA5SP464-201ENST00000516251 108 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.25□□□□□ -1.41
HOXC9P31274 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC6.25□□□□□ -1.41
HOXC9P31274 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.25□□□□□ -1.41
HOXC9P31274 AC023575.1-201ENST00000580510 358 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AC138473.1-201ENST00000605717 526 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.25□□□□□ -1.41
HOXC9P31274 OR7A19P-201ENST00000608051 733 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AL133243.1-201ENST00000614487 366 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AC011944.2-201ENST00000624440 683 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC6.25□□□□□ -1.41
HOXC9P31274 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC6.25□□□□□ -1.41
HOXC9P31274 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 AP002512.4-202ENST00000641599 4530 ntBASIC6.25□□□□□ -1.41
HOXC9P31274 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
HOXC9P31274 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
HOXC9P31274 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXC9P31274 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXC9P31274 AC079809.1-201ENST00000415468 276 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 NPM1P33-201ENST00000438918 872 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 FHP1-201ENST00000442741 703 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 AC010618.1-201ENST00000469924 477 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 AL049874.2-201ENST00000492636 288 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 AC105031.1-201ENST00000518550 476 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXC9P31274 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.24□□□□□ -1.41
HOXC9P31274 MIR4675-201ENST00000577898 77 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 IGKV2OR2-2-201ENST00000605025 300 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 AC100814.1-201ENST00000606963 623 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 BX005214.3-202ENST00000619809 325 ntBASIC6.24□□□□□ -1.41
HOXC9P31274 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
HOXC9P31274 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.24□□□□□ -1.41
HOXC9P31274 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.24□□□□□ -1.41
HOXC9P31274 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXC9P31274 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HOXC9P31274 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.23□□□□□ -1.41
HOXC9P31274 AL449283.1-201ENST00000602631 3403 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 SAMM50P1-201ENST00000455403 1399 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
HOXC9P31274 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXC9P31274 SNORA71.2-201ENST00000364941 134 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 TRAV35-201ENST00000390462 330 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 RPL21P108-201ENST00000413857 481 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXC9P31274 RPL7P57-201ENST00000423238 740 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 FTH1P16-201ENST00000435241 552 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 RPL23AP24-201ENST00000458203 385 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AC109327.1-201ENST00000471666 403 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AC020898.1-201ENST00000474167 787 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AC104763.1-201ENST00000475274 360 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms