Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 AL627308.1-201ENST00000435693 821 ntBASIC5.06□□□□□ -1.6
MSH3P20585 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 ARL5AP3-201ENST00000439327 386 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 EIF2S2P4-201ENST00000461070 984 ntBASIC5.06□□□□□ -1.6
MSH3P20585 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AC022336.1-201ENST00000475510 337 ntBASIC5.06□□□□□ -1.6
MSH3P20585 RPL5P22-201ENST00000480199 884 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC098583.1-201ENST00000480875 255 ntBASIC5.06□□□□□ -1.6
MSH3P20585 RN7SL727P-201ENST00000482164 296 ntBASIC5.06□□□□□ -1.6
MSH3P20585 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AC109462.1-201ENST00000491087 368 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC104629.1-201ENST00000494226 508 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
MSH3P20585 AC147055.3-201ENST00000510547 851 ntBASIC5.06□□□□□ -1.6
MSH3P20585 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 AC027338.1-201ENST00000514840 825 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AL671862.1-201ENST00000515851 349 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AP000859.1-201ENST00000525536 307 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 AC008126.1-201ENST00000549019 480 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 MIR4472-2-201ENST00000582069 67 ntBASIC5.06□□□□□ -1.6
MSH3P20585 OR7E18P-201ENST00000592589 702 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC006116.3-201ENST00000592968 361 ntBASIC5.06□□□□□ -1.6
MSH3P20585 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.06□□□□□ -1.6
MSH3P20585 BNIP3P39-201ENST00000601077 554 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.06□□□□□ -1.6
MSH3P20585 AL159169.2-201ENST00000610061 1269 ntBASIC5.06□□□□□ -1.6
MSH3P20585 RPSAP73-201ENST00000614820 330 ntBASIC5.06□□□□□ -1.6
MSH3P20585 BX005214.3-202ENST00000619809 325 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AC015660.5-201ENST00000623238 564 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AP006248.3-201ENST00000623580 594 ntBASIC5.06□□□□□ -1.6
MSH3P20585 AP003499.2-201ENST00000624100 483 ntBASIC5.06□□□□□ -1.6
MSH3P20585 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.06□□□□□ -1.6
MSH3P20585 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSH3P20585 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 AC007996.1-201ENST00000620414 2821 ntBASIC5.05□□□□□ -1.6
MSH3P20585 MIR421-201ENST00000365696 85 ntBASIC5.05□□□□□ -1.6
MSH3P20585 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 AL672167.2-201ENST00000377164 879 ntBASIC5.05□□□□□ -1.6
MSH3P20585 SNORA2.3-201ENST00000383920 135 ntBASIC5.05□□□□□ -1.6
MSH3P20585 RN7SKP213-201ENST00000410746 298 ntBASIC5.05□□□□□ -1.6
MSH3P20585 NPM1P40-201ENST00000412758 733 ntBASIC5.05□□□□□ -1.6
MSH3P20585 DDX39BP1-205ENST00000422507 192 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AC104333.2-201ENST00000422630 192 ntBASIC5.05□□□□□ -1.6
MSH3P20585 HSPE1P16-201ENST00000426640 348 ntBASIC5.05□□□□□ -1.6
MSH3P20585 COX6CP13-201ENST00000428703 226 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.05□□□□□ -1.6
MSH3P20585 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.05□□□□□ -1.6
MSH3P20585 AC004980.3-201ENST00000447046 365 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 RPSAP50-201ENST00000481955 852 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AC004815.1-201ENST00000484185 331 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AC093763.2-201ENST00000505334 1223 ntBASIC5.05□□□□□ -1.6
MSH3P20585 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.05□□□□□ -1.6
MSH3P20585 HMGN1P15-201ENST00000513870 295 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.05□□□□□ -1.6
MSH3P20585 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
MSH3P20585 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.05□□□□□ -1.6
MSH3P20585 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.05□□□□□ -1.6
MSH3P20585 CKS1BP1-201ENST00000555221 240 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AC027176.2-201ENST00000559166 746 ntBASIC5.05□□□□□ -1.6
MSH3P20585 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.05□□□□□ -1.6
MSH3P20585 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.05□□□□□ -1.6
MSH3P20585 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
MSH3P20585 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.04□□□□□ -1.6
MSH3P20585 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.04□□□□□ -1.6
MSH3P20585 THAP12P4-201ENST00000528321 2266 ntBASIC5.04□□□□□ -1.6
MSH3P20585 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.04□□□□□ -1.6
MSH3P20585 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
MSH3P20585 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms