Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.83□□□□□ -1.64
SHOX2O60902 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 AL121950.1-201ENST00000624993 2077 ntBASIC4.83□□□□□ -1.64
SHOX2O60902 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SHOX2O60902 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHOX2O60902 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SHOX2O60902 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.82□□□□□ -1.64
SHOX2O60902 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 OR13C1P-202ENST00000641378 2919 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 RN7SKP115-201ENST00000363177 317 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 GCNT6-201ENST00000379591 934 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.82□□□□□ -1.64
SHOX2O60902 AC012075.1-201ENST00000436549 580 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 AC064862.4-201ENST00000442180 334 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 AL121877.1-201ENST00000453704 622 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.82□□□□□ -1.64
SHOX2O60902 RPS6P4-201ENST00000494693 758 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.82□□□□□ -1.64
SHOX2O60902 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.82□□□□□ -1.64
SHOX2O60902 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.82□□□□□ -1.64
SHOX2O60902 AC068790.5-201ENST00000602741 355 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.82□□□□□ -1.64
SHOX2O60902 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 AC127024.6-201ENST00000621598 424 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 MIR4727-201ENST00000622232 55 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 AC093909.5-201ENST00000621839 1799 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.82□□□□□ -1.64
SHOX2O60902 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.82□□□□□ -1.64
SHOX2O60902 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.82□□□□□ -1.64
SHOX2O60902 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.82□□□□□ -1.64
SHOX2O60902 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SHOX2O60902 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SHOX2O60902 AC018529.3-201ENST00000624212 2254 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 AC008758.3-201ENST00000507003 1829 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
SHOX2O60902 RNA5SP319-201ENST00000362768 119 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 RNU1-77P-201ENST00000390868 162 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 VDAC2P1-201ENST00000399358 958 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 RNU2-22P-201ENST00000411266 212 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC4.81□□□□□ -1.64
SHOX2O60902 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 RPS11P7-201ENST00000442125 465 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 AC000111.2-201ENST00000448200 210 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SHOX2O60902 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
SHOX2O60902 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 IGLV2-28-201ENST00000520681 304 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 IFITM8P-201ENST00000522529 394 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.81□□□□□ -1.64
SHOX2O60902 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.81□□□□□ -1.64
SHOX2O60902 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.81□□□□□ -1.64
SHOX2O60902 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.81□□□□□ -1.64
SHOX2O60902 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.81□□□□□ -1.64
SHOX2O60902 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.81□□□□□ -1.64
SHOX2O60902 HMGB2P1-201ENST00000591146 634 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 IMMP1LP3-201ENST00000604197 224 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 AC087821.1-201ENST00000623639 567 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
SHOX2O60902 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.81□□□□□ -1.64
SHOX2O60902 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.81□□□□□ -1.64
SHOX2O60902 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 RNF19BPY-201ENST00000458209 1550 ntBASIC4.81□□□□□ -1.64
SHOX2O60902 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SHOX2O60902 AC016588.2-201ENST00000632484 3021 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 MAPK10-304ENST00000641341 3984 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms