Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.9■□□□□ 0.94
SOX4Q06945 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.9■□□□□ 0.94
SOX4Q06945 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SOX4Q06945 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.9■□□□□ 0.94
SOX4Q06945 AC011298.2-201ENST00000617989 482 ntBASIC20.9■□□□□ 0.94
SOX4Q06945 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.9■□□□□ 0.94
SOX4Q06945 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SOX4Q06945 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.9■□□□□ 0.94
SOX4Q06945 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.9■□□□□ 0.94
SOX4Q06945 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX4Q06945 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SOX4Q06945 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.89■□□□□ 0.94
SOX4Q06945 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.89■□□□□ 0.94
SOX4Q06945 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.89■□□□□ 0.94
SOX4Q06945 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.93
SOX4Q06945 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.89■□□□□ 0.93
SOX4Q06945 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX4Q06945 AC091390.4-202ENST00000476426 537 ntBASIC20.89■□□□□ 0.93
SOX4Q06945 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX4Q06945 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.89■□□□□ 0.93
SOX4Q06945 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.89■□□□□ 0.93
SOX4Q06945 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SOX4Q06945 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.89■□□□□ 0.93
SOX4Q06945 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SOX4Q06945 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX4Q06945 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SOX4Q06945 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 AC004951.3-201ENST00000418645 1148 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX4Q06945 FAM210CP-201ENST00000445714 574 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX4Q06945 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX4Q06945 KRT18P21-201ENST00000515767 1272 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 AL160286.2-201ENST00000567150 934 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 AC145285.6-201ENST00000604632 637 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 DGCR10-201ENST00000609839 495 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX4Q06945 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.88■□□□□ 0.93
SOX4Q06945 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 PCDHAC2-203ENST00000615316 3011 ntBASIC20.88■□□□□ 0.93
SOX4Q06945 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SOX4Q06945 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX4Q06945 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.87■□□□□ 0.93
SOX4Q06945 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.87■□□□□ 0.93
SOX4Q06945 RCN1P1-201ENST00000400413 996 ntBASIC20.87■□□□□ 0.93
SOX4Q06945 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.87■□□□□ 0.93
SOX4Q06945 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 AC097488.1-201ENST00000507834 756 ntBASIC20.87■□□□□ 0.93
SOX4Q06945 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.87■□□□□ 0.93
SOX4Q06945 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.87■□□□□ 0.93
SOX4Q06945 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.87■□□□□ 0.93
SOX4Q06945 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.87■□□□□ 0.93
SOX4Q06945 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 AP000692.2-201ENST00000608391 879 ntBASIC20.87■□□□□ 0.93
SOX4Q06945 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.87■□□□□ 0.93
SOX4Q06945 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.87■□□□□ 0.93
SOX4Q06945 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX4Q06945 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.86■□□□□ 0.93
SOX4Q06945 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.86■□□□□ 0.93
SOX4Q06945 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms