Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.79■□□□□ 0.6
COL5A1P20908 AL441883.1-201ENST00000566170 1045 ntBASIC18.79■□□□□ 0.6
COL5A1P20908 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.79■□□□□ 0.6
COL5A1P20908 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
COL5A1P20908 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A1P20908 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
COL5A1P20908 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 KRT126P-201ENST00000549467 1181 ntBASIC18.78■□□□□ 0.6
COL5A1P20908 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A1P20908 AL160286.2-201ENST00000567150 934 ntBASIC18.78■□□□□ 0.6
COL5A1P20908 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A1P20908 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.77■□□□□ 0.6
COL5A1P20908 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A1P20908 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.77■□□□□ 0.6
COL5A1P20908 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A1P20908 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
COL5A1P20908 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.77■□□□□ 0.6
COL5A1P20908 AL023973.1-201ENST00000624619 620 ntBASIC18.77■□□□□ 0.6
COL5A1P20908 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.77■□□□□ 0.6
COL5A1P20908 BX119927.1-201ENST00000636596 1552 ntBASIC18.77■□□□□ 0.6
COL5A1P20908 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A1P20908 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A1P20908 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A1P20908 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL5A1P20908 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL5A1P20908 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A1P20908 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.77■□□□□ 0.59
COL5A1P20908 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A1P20908 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL5A1P20908 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A1P20908 AC093458.2-201ENST00000623150 629 ntBASIC18.77■□□□□ 0.59
COL5A1P20908 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
COL5A1P20908 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A1P20908 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 GABARAPL3-202ENST00000624044 1851 ntBASIC18.76■□□□□ 0.59
COL5A1P20908 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL5A1P20908 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
COL5A1P20908 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.76■□□□□ 0.59
COL5A1P20908 NEK4P2-201ENST00000580004 1012 ntBASIC18.76■□□□□ 0.59
COL5A1P20908 AL031432.5-201ENST00000641059 760 ntBASIC18.76■□□□□ 0.59
COL5A1P20908 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.76■□□□□ 0.59
COL5A1P20908 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A1P20908 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A1P20908 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.76■□□□□ 0.59
COL5A1P20908 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL5A1P20908 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL5A1P20908 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL5A1P20908 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A1P20908 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL5A1P20908 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 AC112907.2-201ENST00000448639 330 ntBASIC18.75■□□□□ 0.59
COL5A1P20908 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.75■□□□□ 0.59
COL5A1P20908 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL5A1P20908 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL5A1P20908 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A1P20908 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 AL450487.1-201ENST00000426799 995 ntBASIC18.74■□□□□ 0.59
COL5A1P20908 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A1P20908 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A1P20908 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A1P20908 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A1P20908 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
COL5A1P20908 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A1P20908 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.74■□□□□ 0.59
COL5A1P20908 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL5A1P20908 KRT8P41-201ENST00000533985 1514 ntBASIC18.74■□□□□ 0.59
COL5A1P20908 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL5A1P20908 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms