Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.74■□□□□ 0.43
FREM3P0C091 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.74■□□□□ 0.43
FREM3P0C091 BX088651.1-201ENST00000540551 451 ntBASIC17.74■□□□□ 0.43
FREM3P0C091 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.74■□□□□ 0.43
FREM3P0C091 MIR4785-201ENST00000585005 73 ntBASIC17.74■□□□□ 0.43
FREM3P0C091 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.74■□□□□ 0.43
FREM3P0C091 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.74■□□□□ 0.43
FREM3P0C091 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
FREM3P0C091 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.74■□□□□ 0.43
FREM3P0C091 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.74■□□□□ 0.43
FREM3P0C091 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.74■□□□□ 0.43
FREM3P0C091 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.74■□□□□ 0.43
FREM3P0C091 AP003071.4-201ENST00000562276 1284 ntBASIC17.74■□□□□ 0.43
FREM3P0C091 AC073912.3-201ENST00000624414 853 ntBASIC17.74■□□□□ 0.43
FREM3P0C091 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.74■□□□□ 0.43
FREM3P0C091 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
FREM3P0C091 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
FREM3P0C091 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
FREM3P0C091 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.73■□□□□ 0.43
FREM3P0C091 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
FREM3P0C091 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.73■□□□□ 0.43
FREM3P0C091 ECEL1P3-201ENST00000427961 737 ntBASIC17.73■□□□□ 0.43
FREM3P0C091 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FREM3P0C091 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.73■□□□□ 0.43
FREM3P0C091 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FREM3P0C091 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.73■□□□□ 0.43
FREM3P0C091 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
FREM3P0C091 KRT17P2-201ENST00000300992 1314 ntBASIC17.72■□□□□ 0.43
FREM3P0C091 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.72■□□□□ 0.43
FREM3P0C091 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.72■□□□□ 0.43
FREM3P0C091 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.72■□□□□ 0.43
FREM3P0C091 AC073195.1-201ENST00000607241 877 ntBASIC17.72■□□□□ 0.43
FREM3P0C091 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 TMEM179-206ENST00000616017 1645 ntBASIC17.72■□□□□ 0.43
FREM3P0C091 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.72■□□□□ 0.43
FREM3P0C091 FAM197Y1-201ENST00000421178 764 ntBASIC17.72■□□□□ 0.43
FREM3P0C091 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.72■□□□□ 0.43
FREM3P0C091 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
FREM3P0C091 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.72■□□□□ 0.43
FREM3P0C091 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.72■□□□□ 0.43
FREM3P0C091 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.72■□□□□ 0.43
FREM3P0C091 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
FREM3P0C091 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
FREM3P0C091 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.71■□□□□ 0.43
FREM3P0C091 TSPY15P-201ENST00000457163 923 ntBASIC17.71■□□□□ 0.43
FREM3P0C091 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.71■□□□□ 0.43
FREM3P0C091 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.71■□□□□ 0.43
FREM3P0C091 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.71■□□□□ 0.43
FREM3P0C091 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
FREM3P0C091 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms