Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
HOXC4P09017 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HOXC4P09017 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 SLC25A1P4-201ENST00000567977 778 ntBASIC19.07■□□□□ 0.64
HOXC4P09017 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC4P09017 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC4P09017 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.07■□□□□ 0.64
HOXC4P09017 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HOXC4P09017 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 KRT8P41-201ENST00000533985 1514 ntBASIC19.06■□□□□ 0.64
HOXC4P09017 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HOXC4P09017 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HOXC4P09017 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC4P09017 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC4P09017 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC4P09017 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.06■□□□□ 0.64
HOXC4P09017 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HOXC4P09017 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC4P09017 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.06■□□□□ 0.64
HOXC4P09017 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC4P09017 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC4P09017 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC4P09017 AL157384.1-201ENST00000445995 2473 ntBASIC19.05■□□□□ 0.64
HOXC4P09017 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HOXC4P09017 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.05■□□□□ 0.64
HOXC4P09017 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HOXC4P09017 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC4P09017 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC4P09017 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC4P09017 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HOXC4P09017 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC4P09017 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.05■□□□□ 0.64
HOXC4P09017 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
HOXC4P09017 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC4P09017 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC4P09017 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC4P09017 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HOXC4P09017 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.04■□□□□ 0.64
HOXC4P09017 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.04■□□□□ 0.64
HOXC4P09017 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 MFAP1P1-201ENST00000442257 1255 ntBASIC19.04■□□□□ 0.64
HOXC4P09017 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HOXC4P09017 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.04■□□□□ 0.64
HOXC4P09017 AC005363.2-201ENST00000618631 242 ntBASIC19.04■□□□□ 0.64
HOXC4P09017 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HOXC4P09017 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.04■□□□□ 0.64
HOXC4P09017 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.04■□□□□ 0.64
HOXC4P09017 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
HOXC4P09017 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HOXC4P09017 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC4P09017 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXC4P09017 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms