Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.9■■□□□ 1.74
COL3A1P02461 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
COL3A1P02461 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL3A1P02461 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL3A1P02461 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
COL3A1P02461 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL3A1P02461 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL3A1P02461 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.73
COL3A1P02461 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL3A1P02461 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.89■■□□□ 1.73
COL3A1P02461 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC25.89■■□□□ 1.73
COL3A1P02461 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.89■■□□□ 1.73
COL3A1P02461 AC131212.4-201ENST00000623606 975 ntBASIC25.89■■□□□ 1.73
COL3A1P02461 AC097493.4-201ENST00000641197 219 ntBASIC25.89■■□□□ 1.73
COL3A1P02461 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.73
COL3A1P02461 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL3A1P02461 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
COL3A1P02461 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC25.89■■□□□ 1.73
COL3A1P02461 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC25.89■■□□□ 1.73
COL3A1P02461 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.89■■□□□ 1.73
COL3A1P02461 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL3A1P02461 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.88■■□□□ 1.73
COL3A1P02461 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
COL3A1P02461 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC25.88■■□□□ 1.73
COL3A1P02461 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.88■■□□□ 1.73
COL3A1P02461 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL3A1P02461 ZNF815P-204ENST00000434898 1737 ntBASIC25.88■■□□□ 1.73
COL3A1P02461 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.87■■□□□ 1.73
COL3A1P02461 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC25.87■■□□□ 1.73
COL3A1P02461 AC011298.2-201ENST00000617989 482 ntBASIC25.87■■□□□ 1.73
COL3A1P02461 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC25.87■■□□□ 1.73
COL3A1P02461 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC25.87■■□□□ 1.73
COL3A1P02461 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL3A1P02461 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.87■■□□□ 1.73
COL3A1P02461 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC25.87■■□□□ 1.73
COL3A1P02461 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL3A1P02461 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC25.86■■□□□ 1.73
COL3A1P02461 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.86■■□□□ 1.73
COL3A1P02461 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.86■■□□□ 1.73
COL3A1P02461 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL3A1P02461 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 CYP2D8P-201ENST00000433633 1490 ntBASIC25.86■■□□□ 1.73
COL3A1P02461 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 ANKRD18DP-204ENST00000455355 1975 ntBASIC25.86■■□□□ 1.73
COL3A1P02461 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL3A1P02461 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
COL3A1P02461 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL3A1P02461 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL3A1P02461 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
COL3A1P02461 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.86■■□□□ 1.73
COL3A1P02461 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 AC004951.3-201ENST00000418645 1148 ntBASIC25.85■■□□□ 1.73
COL3A1P02461 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 AC010947.1-201ENST00000623454 693 ntBASIC25.85■■□□□ 1.73
COL3A1P02461 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC25.85■■□□□ 1.73
COL3A1P02461 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 AC073130.3-201ENST00000624389 2278 ntBASIC25.85■■□□□ 1.73
COL3A1P02461 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.85■■□□□ 1.73
COL3A1P02461 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC25.85■■□□□ 1.73
COL3A1P02461 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC25.85■■□□□ 1.73
COL3A1P02461 MIR1238-201ENST00000408483 83 ntBASIC25.85■■□□□ 1.73
COL3A1P02461 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.85■■□□□ 1.73
COL3A1P02461 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC25.85■■□□□ 1.73
COL3A1P02461 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL3A1P02461 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL3A1P02461 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL3A1P02461 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms