Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ddx56Q9D0R4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
Ddx56Q9D0R4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC24.84■■□□□ 1.57
Ddx56Q9D0R4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
Ddx56Q9D0R4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Ddx56Q9D0R4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Ddx56Q9D0R4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ddx56Q9D0R4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC24.83■■□□□ 1.57
Ddx56Q9D0R4 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ddx56Q9D0R4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ddx56Q9D0R4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
Ddx56Q9D0R4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddx56Q9D0R4 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddx56Q9D0R4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ddx56Q9D0R4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
Ddx56Q9D0R4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC24.8■■□□□ 1.56
Ddx56Q9D0R4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC24.8■■□□□ 1.56
Ddx56Q9D0R4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC24.8■■□□□ 1.56
Ddx56Q9D0R4 Gm9939-201ENSMUST00000067161 1154 ntBASIC24.8■■□□□ 1.56
Ddx56Q9D0R4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC24.79■■□□□ 1.56
Ddx56Q9D0R4 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddx56Q9D0R4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
Ddx56Q9D0R4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Ddx56Q9D0R4 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ddx56Q9D0R4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ddx56Q9D0R4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Ddx56Q9D0R4 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ddx56Q9D0R4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC24.71■■□□□ 1.55
Ddx56Q9D0R4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddx56Q9D0R4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Ddx56Q9D0R4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC24.7■■□□□ 1.54
Ddx56Q9D0R4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ddx56Q9D0R4 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC24.7■■□□□ 1.54
Ddx56Q9D0R4 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
Ddx56Q9D0R4 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC24.69■■□□□ 1.54
Ddx56Q9D0R4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 AC153890.1-201ENSMUST00000220021 2469 ntBASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Gm6821-201ENSMUST00000107540 542 ntBASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Gm37847-201ENSMUST00000192163 1497 ntBASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Gm31748-201ENSMUST00000194938 1497 ntBASIC24.68■■□□□ 1.54
Ddx56Q9D0R4 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Ddx56Q9D0R4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC24.65■■□□□ 1.54
Ddx56Q9D0R4 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Ddx56Q9D0R4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddx56Q9D0R4 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
Ddx56Q9D0R4 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ddx56Q9D0R4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC24.64■■□□□ 1.54
Ddx56Q9D0R4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC24.64■■□□□ 1.54
Ddx56Q9D0R4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Ddx56Q9D0R4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Ddx56Q9D0R4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Ddx56Q9D0R4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.63■■□□□ 1.53
Ddx56Q9D0R4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
Ddx56Q9D0R4 Particl-201ENSMUST00000205370 1560 ntBASIC24.63■■□□□ 1.53
Ddx56Q9D0R4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Ddx56Q9D0R4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddx56Q9D0R4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddx56Q9D0R4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddx56Q9D0R4 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ddx56Q9D0R4 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddx56Q9D0R4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Ddx56Q9D0R4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC24.58■■□□□ 1.53
Ddx56Q9D0R4 Gm8503-201ENSMUST00000118131 455 ntBASIC24.58■■□□□ 1.53
Ddx56Q9D0R4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC24.58■■□□□ 1.53
Ddx56Q9D0R4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddx56Q9D0R4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddx56Q9D0R4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.52
Ddx56Q9D0R4 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.52
Ddx56Q9D0R4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Ddx56Q9D0R4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Ddx56Q9D0R4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddx56Q9D0R4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddx56Q9D0R4 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddx56Q9D0R4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Ddx56Q9D0R4 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Ddx56Q9D0R4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Ddx56Q9D0R4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Ddx56Q9D0R4 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ddx56Q9D0R4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Ddx56Q9D0R4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC24.54■■□□□ 1.52
Ddx56Q9D0R4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
Ddx56Q9D0R4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddx56Q9D0R4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ddx56Q9D0R4 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddx56Q9D0R4 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC24.5■■□□□ 1.51
Ddx56Q9D0R4 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms