Protein–RNA interactions for Protein: Q9CWM4

Pfdn1, Prefoldin subunit 1, mousemouse

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn1Q9CWM4 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pfdn1Q9CWM4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Pfdn1Q9CWM4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pfdn1Q9CWM4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pfdn1Q9CWM4 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Pfdn1Q9CWM4 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Pfdn1Q9CWM4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Pfdn1Q9CWM4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
Pfdn1Q9CWM4 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pfdn1Q9CWM4 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Pfdn1Q9CWM4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Pfdn1Q9CWM4 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Pfdn1Q9CWM4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Pfdn1Q9CWM4 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Pfdn1Q9CWM4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Pfdn1Q9CWM4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Pfdn1Q9CWM4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Pfdn1Q9CWM4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pfdn1Q9CWM4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pfdn1Q9CWM4 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Pfdn1Q9CWM4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Pfdn1Q9CWM4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Pfdn1Q9CWM4 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Pfdn1Q9CWM4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.6■□□□□ 0.89
Pfdn1Q9CWM4 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Pfdn1Q9CWM4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.59■□□□□ 0.89
Pfdn1Q9CWM4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Pfdn1Q9CWM4 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Pfdn1Q9CWM4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Pfdn1Q9CWM4 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Pfdn1Q9CWM4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC20.58■□□□□ 0.89
Pfdn1Q9CWM4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pfdn1Q9CWM4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Pfdn1Q9CWM4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Pfdn1Q9CWM4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Pfdn1Q9CWM4 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pfdn1Q9CWM4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pfdn1Q9CWM4 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pfdn1Q9CWM4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Pfdn1Q9CWM4 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pfdn1Q9CWM4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Pfdn1Q9CWM4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pfdn1Q9CWM4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Pfdn1Q9CWM4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Pfdn1Q9CWM4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Pfdn1Q9CWM4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Pfdn1Q9CWM4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Pfdn1Q9CWM4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.52■□□□□ 0.88
Pfdn1Q9CWM4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.52■□□□□ 0.88
Pfdn1Q9CWM4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Pfdn1Q9CWM4 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Pfdn1Q9CWM4 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Pfdn1Q9CWM4 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Pfdn1Q9CWM4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pfdn1Q9CWM4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Pfdn1Q9CWM4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Pfdn1Q9CWM4 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Pfdn1Q9CWM4 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pfdn1Q9CWM4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Pfdn1Q9CWM4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pfdn1Q9CWM4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pfdn1Q9CWM4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Pfdn1Q9CWM4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Pfdn1Q9CWM4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Pfdn1Q9CWM4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Pfdn1Q9CWM4 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Pfdn1Q9CWM4 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pfdn1Q9CWM4 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pfdn1Q9CWM4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Pfdn1Q9CWM4 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pfdn1Q9CWM4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Pfdn1Q9CWM4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Pfdn1Q9CWM4 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 87.3 ms