Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhb3Q91XZ7 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Pcdhb3Q91XZ7 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.34■■□□□ 1.33
Pcdhb3Q91XZ7 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhb3Q91XZ7 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhb3Q91XZ7 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Pcdhb3Q91XZ7 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhb3Q91XZ7 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC23.33■■□□□ 1.33
Pcdhb3Q91XZ7 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Pcdhb3Q91XZ7 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhb3Q91XZ7 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdhb3Q91XZ7 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.31■■□□□ 1.32
Pcdhb3Q91XZ7 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC23.31■■□□□ 1.32
Pcdhb3Q91XZ7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Pcdhb3Q91XZ7 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhb3Q91XZ7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhb3Q91XZ7 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdhb3Q91XZ7 Gm9397-201ENSMUST00000200125 605 ntBASIC23.3■■□□□ 1.32
Pcdhb3Q91XZ7 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhb3Q91XZ7 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhb3Q91XZ7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdhb3Q91XZ7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhb3Q91XZ7 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdhb3Q91XZ7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Pcdhb3Q91XZ7 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb3Q91XZ7 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb3Q91XZ7 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb3Q91XZ7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb3Q91XZ7 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdhb3Q91XZ7 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb3Q91XZ7 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb3Q91XZ7 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb3Q91XZ7 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdhb3Q91XZ7 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC23.25■■□□□ 1.31
Pcdhb3Q91XZ7 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb3Q91XZ7 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb3Q91XZ7 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdhb3Q91XZ7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.23■■□□□ 1.31
Pcdhb3Q91XZ7 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdhb3Q91XZ7 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.21■■□□□ 1.31
Pcdhb3Q91XZ7 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdhb3Q91XZ7 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC23.2■■□□□ 1.3
Pcdhb3Q91XZ7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.2■■□□□ 1.3
Pcdhb3Q91XZ7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.2■■□□□ 1.3
Pcdhb3Q91XZ7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.2■■□□□ 1.3
Pcdhb3Q91XZ7 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhb3Q91XZ7 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhb3Q91XZ7 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdhb3Q91XZ7 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Pcdhb3Q91XZ7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC23.18■■□□□ 1.3
Pcdhb3Q91XZ7 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdhb3Q91XZ7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdhb3Q91XZ7 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.16■■□□□ 1.3
Pcdhb3Q91XZ7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdhb3Q91XZ7 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdhb3Q91XZ7 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdhb3Q91XZ7 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Pcdhb3Q91XZ7 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Pcdhb3Q91XZ7 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Pcdhb3Q91XZ7 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdhb3Q91XZ7 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdhb3Q91XZ7 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Pcdhb3Q91XZ7 H3f3aos-201ENSMUST00000097448 2905 ntBASIC23.12■■□□□ 1.29
Pcdhb3Q91XZ7 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Pcdhb3Q91XZ7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhb3Q91XZ7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhb3Q91XZ7 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhb3Q91XZ7 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdhb3Q91XZ7 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdhb3Q91XZ7 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Pcdhb3Q91XZ7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdhb3Q91XZ7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms