Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Vps53Q8CCB4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
Vps53Q8CCB4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.22■■□□□ 1.95
Vps53Q8CCB4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Vps53Q8CCB4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Vps53Q8CCB4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Vps53Q8CCB4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Vps53Q8CCB4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC27.17■■□□□ 1.94
Vps53Q8CCB4 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Vps53Q8CCB4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Vps53Q8CCB4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Vps53Q8CCB4 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
Vps53Q8CCB4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC27.16■■□□□ 1.94
Vps53Q8CCB4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Vps53Q8CCB4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
Vps53Q8CCB4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Vps53Q8CCB4 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Vps53Q8CCB4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
Vps53Q8CCB4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Vps53Q8CCB4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Vps53Q8CCB4 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
Vps53Q8CCB4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Vps53Q8CCB4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
Vps53Q8CCB4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Vps53Q8CCB4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Vps53Q8CCB4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC27.11■■□□□ 1.93
Vps53Q8CCB4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27.11■■□□□ 1.93
Vps53Q8CCB4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Vps53Q8CCB4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Vps53Q8CCB4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Vps53Q8CCB4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC27.09■■□□□ 1.93
Vps53Q8CCB4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Vps53Q8CCB4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Vps53Q8CCB4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
Vps53Q8CCB4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Vps53Q8CCB4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Vps53Q8CCB4 Mir6538-201ENSMUST00000183713 110 ntBASIC27.06■■□□□ 1.92
Vps53Q8CCB4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Vps53Q8CCB4 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Vps53Q8CCB4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC27.06■■□□□ 1.92
Vps53Q8CCB4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Vps53Q8CCB4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC27.05■■□□□ 1.92
Vps53Q8CCB4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Vps53Q8CCB4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC27.04■■□□□ 1.92
Vps53Q8CCB4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
Vps53Q8CCB4 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC27.02■■□□□ 1.92
Vps53Q8CCB4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Vps53Q8CCB4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC27■■□□□ 1.91
Vps53Q8CCB4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
Vps53Q8CCB4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Vps53Q8CCB4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Vps53Q8CCB4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Vps53Q8CCB4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Vps53Q8CCB4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
Vps53Q8CCB4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
Vps53Q8CCB4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.98■■□□□ 1.91
Vps53Q8CCB4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Vps53Q8CCB4 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Vps53Q8CCB4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Vps53Q8CCB4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.97■■□□□ 1.91
Vps53Q8CCB4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Vps53Q8CCB4 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Vps53Q8CCB4 Gm11175-201ENSMUST00000116172 543 ntBASIC26.96■■□□□ 1.91
Vps53Q8CCB4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Vps53Q8CCB4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Vps53Q8CCB4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Vps53Q8CCB4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Vps53Q8CCB4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.94■■□□□ 1.9
Vps53Q8CCB4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Vps53Q8CCB4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
Vps53Q8CCB4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Vps53Q8CCB4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
Vps53Q8CCB4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Vps53Q8CCB4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.92■■□□□ 1.9
Vps53Q8CCB4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Vps53Q8CCB4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC26.91■■□□□ 1.9
Vps53Q8CCB4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Vps53Q8CCB4 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Vps53Q8CCB4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Vps53Q8CCB4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Vps53Q8CCB4 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Vps53Q8CCB4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
Vps53Q8CCB4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
Vps53Q8CCB4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms