Protein–RNA interactions for Protein: Q80TE0

Rpap1, RNA polymerase II-associated protein 1, mousemouse

Predictions only

Length 1,409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap1Q80TE0 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC37.91■■■■□ 3.66
Rpap1Q80TE0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
Rpap1Q80TE0 Gm16437-201ENSMUST00000025669 507 ntBASIC37.89■■■■□ 3.66
Rpap1Q80TE0 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC37.88■■■■□ 3.66
Rpap1Q80TE0 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC37.88■■■■□ 3.66
Rpap1Q80TE0 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC37.88■■■■□ 3.66
Rpap1Q80TE0 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC37.88■■■■□ 3.66
Rpap1Q80TE0 Pkd1-207ENSMUST00000228550 1050 ntBASIC37.88■■■■□ 3.66
Rpap1Q80TE0 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
Rpap1Q80TE0 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
Rpap1Q80TE0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
Rpap1Q80TE0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC37.86■■■■□ 3.65
Rpap1Q80TE0 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC37.86■■■■□ 3.65
Rpap1Q80TE0 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC37.86■■■■□ 3.65
Rpap1Q80TE0 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC37.85■■■■□ 3.65
Rpap1Q80TE0 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
Rpap1Q80TE0 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
Rpap1Q80TE0 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
Rpap1Q80TE0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC37.83■■■■□ 3.65
Rpap1Q80TE0 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC37.82■■■■□ 3.65
Rpap1Q80TE0 AC154454.1-201ENSMUST00000225253 216 ntBASIC37.82■■■■□ 3.64
Rpap1Q80TE0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC37.81■■■■□ 3.64
Rpap1Q80TE0 Gm45364-201ENSMUST00000210883 159 ntBASIC37.81■■■■□ 3.64
Rpap1Q80TE0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC37.81■■■■□ 3.64
Rpap1Q80TE0 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC37.79■■■■□ 3.64
Rpap1Q80TE0 Gm27502-201ENSMUST00000183495 199 ntBASIC37.78■■■■□ 3.64
Rpap1Q80TE0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
Rpap1Q80TE0 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC37.78■■■■□ 3.64
Rpap1Q80TE0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC37.77■■■■□ 3.64
Rpap1Q80TE0 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC37.76■■■■□ 3.64
Rpap1Q80TE0 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC37.76■■■■□ 3.63
Rpap1Q80TE0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC37.75■■■■□ 3.63
Rpap1Q80TE0 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC37.75■■■■□ 3.63
Rpap1Q80TE0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC37.74■■■■□ 3.63
Rpap1Q80TE0 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.63
Rpap1Q80TE0 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
Rpap1Q80TE0 Mir3960-201ENSMUST00000198213 73 ntBASIC37.72■■■■□ 3.63
Rpap1Q80TE0 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
Rpap1Q80TE0 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC37.71■■■■□ 3.63
Rpap1Q80TE0 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC37.7■■■■□ 3.63
Rpap1Q80TE0 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC37.7■■■■□ 3.63
Rpap1Q80TE0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC37.7■■■■□ 3.63
Rpap1Q80TE0 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC37.68■■■■□ 3.62
Rpap1Q80TE0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC37.67■■■■□ 3.62
Rpap1Q80TE0 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC37.66■■■■□ 3.62
Rpap1Q80TE0 Gm37136-201ENSMUST00000194368 194 ntBASIC37.66■■■■□ 3.62
Rpap1Q80TE0 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC37.66■■■■□ 3.62
Rpap1Q80TE0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC37.65■■■■□ 3.62
Rpap1Q80TE0 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC37.65■■■■□ 3.62
Rpap1Q80TE0 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Rpap1Q80TE0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Rpap1Q80TE0 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Rpap1Q80TE0 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Rpap1Q80TE0 Gm7332-201ENSMUST00000118351 454 ntBASIC37.61■■■■□ 3.61
Rpap1Q80TE0 Gm9905-201ENSMUST00000065740 1845 ntBASIC37.61■■■■□ 3.61
Rpap1Q80TE0 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
Rpap1Q80TE0 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
Rpap1Q80TE0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC37.59■■■■□ 3.61
Rpap1Q80TE0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
Rpap1Q80TE0 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
Rpap1Q80TE0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC37.57■■■■□ 3.61
Rpap1Q80TE0 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC37.57■■■■□ 3.6
Rpap1Q80TE0 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC37.57■■■■□ 3.6
Rpap1Q80TE0 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
Rpap1Q80TE0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
Rpap1Q80TE0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC37.57■■■■□ 3.6
Rpap1Q80TE0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
Rpap1Q80TE0 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC37.54■■■■□ 3.6
Rpap1Q80TE0 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Rpap1Q80TE0 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Rpap1Q80TE0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
Rpap1Q80TE0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
Rpap1Q80TE0 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Rpap1Q80TE0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC37.52■■■■□ 3.6
Rpap1Q80TE0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC37.51■■■■□ 3.59
Rpap1Q80TE0 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC37.51■■■■□ 3.59
Rpap1Q80TE0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC37.5■■■■□ 3.59
Rpap1Q80TE0 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
Rpap1Q80TE0 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC37.49■■■■□ 3.59
Rpap1Q80TE0 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC37.49■■■■□ 3.59
Rpap1Q80TE0 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
Rpap1Q80TE0 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
Rpap1Q80TE0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC37.47■■■■□ 3.59
Rpap1Q80TE0 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
Rpap1Q80TE0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
Rpap1Q80TE0 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC37.45■■■■□ 3.59
Rpap1Q80TE0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC37.45■■■■□ 3.59
Rpap1Q80TE0 Gm13889-201ENSMUST00000099689 1386 ntBASIC37.45■■■■□ 3.59
Rpap1Q80TE0 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC37.44■■■■□ 3.58
Rpap1Q80TE0 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC37.44■■■■□ 3.58
Rpap1Q80TE0 Gm14523-201ENSMUST00000117260 558 ntBASIC37.42■■■■□ 3.58
Rpap1Q80TE0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC37.41■■■■□ 3.58
Rpap1Q80TE0 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC37.4■■■■□ 3.58
Rpap1Q80TE0 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
Rpap1Q80TE0 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
Rpap1Q80TE0 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
Rpap1Q80TE0 Gm12818-201ENSMUST00000117562 1349 ntBASIC37.37■■■■□ 3.57
Rpap1Q80TE0 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC37.37■■■■□ 3.57
Rpap1Q80TE0 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC37.37■■■■□ 3.57
Rpap1Q80TE0 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC37.37■■■■□ 3.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms