Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm6658-202ENSMUST00000209493 1885 ntBASIC24■■□□□ 1.43
Col27a1Q5QNQ9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Col27a1Q5QNQ9 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
Col27a1Q5QNQ9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Col27a1Q5QNQ9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Col27a1Q5QNQ9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Col27a1Q5QNQ9 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col27a1Q5QNQ9 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.96■■□□□ 1.43
Col27a1Q5QNQ9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Col27a1Q5QNQ9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Col27a1Q5QNQ9 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Col27a1Q5QNQ9 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.95■■□□□ 1.42
Col27a1Q5QNQ9 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Col27a1Q5QNQ9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
Col27a1Q5QNQ9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col27a1Q5QNQ9 Pcf11-205ENSMUST00000208255 1720 ntBASIC23.92■■□□□ 1.42
Col27a1Q5QNQ9 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col27a1Q5QNQ9 Gm14523-201ENSMUST00000117260 558 ntBASIC23.91■■□□□ 1.42
Col27a1Q5QNQ9 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col27a1Q5QNQ9 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col27a1Q5QNQ9 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col27a1Q5QNQ9 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC23.89■■□□□ 1.42
Col27a1Q5QNQ9 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col27a1Q5QNQ9 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col27a1Q5QNQ9 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col27a1Q5QNQ9 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Col27a1Q5QNQ9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col27a1Q5QNQ9 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Col27a1Q5QNQ9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col27a1Q5QNQ9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col27a1Q5QNQ9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col27a1Q5QNQ9 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col27a1Q5QNQ9 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col27a1Q5QNQ9 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col27a1Q5QNQ9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col27a1Q5QNQ9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col27a1Q5QNQ9 AC151971.4-201ENSMUST00000214717 704 ntBASIC23.86■■□□□ 1.41
Col27a1Q5QNQ9 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col27a1Q5QNQ9 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC23.85■■□□□ 1.41
Col27a1Q5QNQ9 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
Col27a1Q5QNQ9 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col27a1Q5QNQ9 Gm5921-201ENSMUST00000075898 882 ntBASIC23.84■■□□□ 1.41
Col27a1Q5QNQ9 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col27a1Q5QNQ9 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC23.83■■□□□ 1.41
Col27a1Q5QNQ9 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col27a1Q5QNQ9 Gm10420-201ENSMUST00000121713 882 ntBASIC23.81■■□□□ 1.4
Col27a1Q5QNQ9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC23.8■■□□□ 1.4
Col27a1Q5QNQ9 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Col27a1Q5QNQ9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Col27a1Q5QNQ9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Col27a1Q5QNQ9 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col27a1Q5QNQ9 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col27a1Q5QNQ9 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Gm37136-201ENSMUST00000194368 194 ntBASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Col27a1Q5QNQ9 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col27a1Q5QNQ9 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col27a1Q5QNQ9 Gm12818-201ENSMUST00000117562 1349 ntBASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Col27a1Q5QNQ9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Col27a1Q5QNQ9 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC23.73■■□□□ 1.39
Col27a1Q5QNQ9 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.73■■□□□ 1.39
Col27a1Q5QNQ9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC23.72■■□□□ 1.39
Col27a1Q5QNQ9 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Col27a1Q5QNQ9 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC23.71■■□□□ 1.39
Col27a1Q5QNQ9 AC122317.2-201ENSMUST00000218708 1248 ntBASIC23.71■■□□□ 1.39
Col27a1Q5QNQ9 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col27a1Q5QNQ9 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Col27a1Q5QNQ9 Gm9910-201ENSMUST00000195385 1550 ntBASIC23.7■■□□□ 1.38
Col27a1Q5QNQ9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col27a1Q5QNQ9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col27a1Q5QNQ9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Col27a1Q5QNQ9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Col27a1Q5QNQ9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.68■■□□□ 1.38
Col27a1Q5QNQ9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Col27a1Q5QNQ9 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
Col27a1Q5QNQ9 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Col27a1Q5QNQ9 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Gm13889-201ENSMUST00000099689 1386 ntBASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Gm5522-201ENSMUST00000189483 1242 ntBASIC23.66■■□□□ 1.38
Col27a1Q5QNQ9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Col27a1Q5QNQ9 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Col27a1Q5QNQ9 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Col27a1Q5QNQ9 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Col27a1Q5QNQ9 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Col27a1Q5QNQ9 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC23.63■■□□□ 1.37
Col27a1Q5QNQ9 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.63■■□□□ 1.37
Col27a1Q5QNQ9 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms