Protein–RNA interactions for Protein: Q08423

Tff1, Trefoil factor 1, mousemouse

Predictions only

Length 87 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tff1Q08423 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.39■□□□□ 0.69
Tff1Q08423 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tff1Q08423 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tff1Q08423 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tff1Q08423 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.38■□□□□ 0.69
Tff1Q08423 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tff1Q08423 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tff1Q08423 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tff1Q08423 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC19.37■□□□□ 0.69
Tff1Q08423 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tff1Q08423 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tff1Q08423 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Tff1Q08423 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.36■□□□□ 0.69
Tff1Q08423 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tff1Q08423 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tff1Q08423 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tff1Q08423 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tff1Q08423 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Tff1Q08423 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tff1Q08423 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tff1Q08423 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Tff1Q08423 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Tff1Q08423 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Tff1Q08423 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Tff1Q08423 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.33■□□□□ 0.68
Tff1Q08423 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Tff1Q08423 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Tff1Q08423 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Tff1Q08423 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Tff1Q08423 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Tff1Q08423 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tff1Q08423 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Tff1Q08423 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Tff1Q08423 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Tff1Q08423 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Tff1Q08423 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tff1Q08423 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Tff1Q08423 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tff1Q08423 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.27■□□□□ 0.68
Tff1Q08423 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Tff1Q08423 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tff1Q08423 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Tff1Q08423 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tff1Q08423 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tff1Q08423 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Tff1Q08423 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tff1Q08423 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Tff1Q08423 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Tff1Q08423 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC19.23■□□□□ 0.67
Tff1Q08423 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Tff1Q08423 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Tff1Q08423 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Tff1Q08423 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Tff1Q08423 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tff1Q08423 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Tff1Q08423 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tff1Q08423 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Tff1Q08423 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tff1Q08423 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tff1Q08423 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tff1Q08423 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC19.2■□□□□ 0.66
Tff1Q08423 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tff1Q08423 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tff1Q08423 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.18■□□□□ 0.66
Tff1Q08423 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tff1Q08423 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Tff1Q08423 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Tff1Q08423 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tff1Q08423 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tff1Q08423 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC19.17■□□□□ 0.66
Tff1Q08423 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC19.16■□□□□ 0.66
Tff1Q08423 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Tff1Q08423 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.15■□□□□ 0.66
Tff1Q08423 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Tff1Q08423 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC19.15■□□□□ 0.66
Tff1Q08423 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Tff1Q08423 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Tff1Q08423 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Tff1Q08423 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Tff1Q08423 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Tff1Q08423 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Tff1Q08423 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Tff1Q08423 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Tff1Q08423 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Tff1Q08423 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Tff1Q08423 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Tff1Q08423 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC19.12■□□□□ 0.65
Tff1Q08423 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Tff1Q08423 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Tff1Q08423 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Tff1Q08423 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.1■□□□□ 0.65
Tff1Q08423 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Tff1Q08423 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Tff1Q08423 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms