Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav4-3A0A0B4J1K1 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav4-3A0A0B4J1K1 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC16.02■□□□□ 0.16
Trav4-3A0A0B4J1K1 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
Trav4-3A0A0B4J1K1 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav4-3A0A0B4J1K1 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Trav4-3A0A0B4J1K1 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Gm25262-201ENSMUST00000174934 133 ntBASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC16■□□□□ 0.15
Trav4-3A0A0B4J1K1 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Trav4-3A0A0B4J1K1 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav4-3A0A0B4J1K1 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav4-3A0A0B4J1K1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav4-3A0A0B4J1K1 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav4-3A0A0B4J1K1 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Trav4-3A0A0B4J1K1 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav4-3A0A0B4J1K1 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav4-3A0A0B4J1K1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Trav4-3A0A0B4J1K1 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav4-3A0A0B4J1K1 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
Trav4-3A0A0B4J1K1 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav4-3A0A0B4J1K1 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trav4-3A0A0B4J1K1 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav4-3A0A0B4J1K1 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trav4-3A0A0B4J1K1 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav4-3A0A0B4J1K1 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav4-3A0A0B4J1K1 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav4-3A0A0B4J1K1 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav4-3A0A0B4J1K1 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav4-3A0A0B4J1K1 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav4-3A0A0B4J1K1 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav4-3A0A0B4J1K1 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav4-3A0A0B4J1K1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav4-3A0A0B4J1K1 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav4-3A0A0B4J1K1 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Trav4-3A0A0B4J1K1 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav4-3A0A0B4J1K1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav4-3A0A0B4J1K1 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC15.89■□□□□ 0.13
Trav4-3A0A0B4J1K1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trav4-3A0A0B4J1K1 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav4-3A0A0B4J1K1 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav4-3A0A0B4J1K1 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav4-3A0A0B4J1K1 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Trav4-3A0A0B4J1K1 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav4-3A0A0B4J1K1 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms