Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SNX9Q9Y5X1 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SNX9Q9Y5X1 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
SNX9Q9Y5X1 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SNX9Q9Y5X1 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SNX9Q9Y5X1 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 RNU4-39P-201ENST00000362455 127 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 OR13C3-201ENST00000374781 1108 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 SNORA2.3-201ENST00000383920 135 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL589647.1-201ENST00000402485 466 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC002524.1-201ENST00000411687 547 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 HYALP1-201ENST00000417674 1279 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 MTCO1P51-201ENST00000427672 1060 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 RBMY2QP-201ENST00000429799 1147 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 BX323845.1-201ENST00000432417 179 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 HMGB3P10-201ENST00000434734 572 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 RHOT1P3-201ENST00000436571 331 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 PSMD10P3-201ENST00000437000 448 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 RPL34P20-201ENST00000442771 351 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 MTND2P25-201ENST00000449028 610 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 RN7SL610P-201ENST00000463845 291 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 OR9N1P-201ENST00000491296 333 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 OR8A2P-201ENST00000528631 952 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC027369.5-201ENST00000533838 755 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 MIR4691-201ENST00000583764 85 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 DNAJC19P3-201ENST00000594491 331 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC105254.2-201ENST00000603636 436 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL139022.2-201ENST00000606934 443 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL627230.1-201ENST00000613077 211 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 EIF3FP1-201ENST00000613970 806 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AL591926.8-201ENST00000616876 211 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AP006248.3-201ENST00000623580 594 ntBASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.46□□□□□ -1.54
SNX9Q9Y5X1 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 CASC19-221ENST00000641309 1382 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RNU6-1263P-201ENST00000384601 106 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 CHMP1B2P-201ENST00000399581 597 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RPL12P9-201ENST00000412942 488 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AL158053.1-201ENST00000441503 453 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 MTND6P32-201ENST00000457611 483 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 snoU13.20-201ENST00000459180 104 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AC091180.1-201ENST00000462104 372 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RN7SL826P-201ENST00000479724 288 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 OR11I1P-201ENST00000486033 954 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RN7SL97P-201ENST00000486780 299 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RN7SL244P-201ENST00000493405 297 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AC010350.1-201ENST00000504908 231 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AC098976.1-201ENST00000513014 541 ntBASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.45□□□□□ -1.54
SNX9Q9Y5X1 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms