Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AP003102.1-201ENST00000525638 661 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC125612.1-201ENST00000547580 377 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AL358913.1-201ENST00000554342 121 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC093510.2-201ENST00000562820 896 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SNORD39.2-201ENST00000579995 76 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 MIR4472-2-201ENST00000582069 67 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 BNIP3P31-201ENST00000604515 566 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC000068.2-201ENST00000608816 460 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AP000240.1-201ENST00000609910 452 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC007683.2-201ENST00000624681 714 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC132825.1-201ENST00000463573 2247 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC093775.1-201ENST00000624154 1868 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 RNA5SP319-201ENST00000362768 119 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 RNA5SP234-201ENST00000363916 119 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 RN7SKP124-201ENST00000364730 341 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 RNA5SP223-201ENST00000365174 120 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 RNU4-2-201ENST00000365668 141 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 MIR105-1-201ENST00000385222 81 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 GAPDHP42-201ENST00000406848 981 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 NPM1P40-201ENST00000412758 733 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 MTND2P9-201ENST00000422293 931 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 MRPL50P1-201ENST00000431951 384 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 CLUHP1-201ENST00000435012 1190 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 RN7SL423P-201ENST00000486202 304 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 RN7SL629P-201ENST00000489622 285 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 COX6B1P2-201ENST00000489624 230 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 RPS4XP14-201ENST00000493072 781 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 ENPP7P11-201ENST00000505915 627 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC010374.2-201ENST00000512933 535 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC022360.1-201ENST00000521058 340 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 SOX5P1-201ENST00000524155 1127 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC025918.2-201ENST00000558683 763 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 MIR4489-201ENST00000578869 62 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL162431.4-201ENST00000604674 411 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC022467.1-201ENST00000614738 749 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC109583.2-201ENST00000617367 129 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
NKX3-1Q99801 AL672167.1-204ENST00000641875 3017 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 AC023421.1-201ENST00000590535 1785 ntBASIC4.52□□□□□ -1.69
NKX3-1Q99801 STX3-208ENST00000641815 3236 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms