Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.49□□□□□ -1.53
PTCHD3Q3KNS1 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
PTCHD3Q3KNS1 AL355488.2-201ENST00000609909 2850 ntBASIC5.49□□□□□ -1.53
PTCHD3Q3KNS1 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 ADAM24P-201ENST00000398655 2101 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 MRE11P1-201ENST00000464884 2127 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 RNA5SP498-201ENST00000411342 120 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 HMGB3P6-201ENST00000444896 598 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AL035407.2-201ENST00000454090 378 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 RPS6P2-201ENST00000454208 705 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SNORD125-201ENST00000459538 96 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 RN7SL72P-201ENST00000460697 269 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC110749.1-201ENST00000462007 357 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC023050.1-201ENST00000498198 304 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 RPS17P5-201ENST00000498293 408 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SUMO2P4-201ENST00000504193 276 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC074087.1-201ENST00000512059 724 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 MRPS36P3-201ENST00000519284 130 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC125612.1-201ENST00000547580 377 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AL589674.2-201ENST00000604304 337 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC107952.2-201ENST00000606048 486 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC011472.4-201ENST00000615848 491 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 MIR6826-201ENST00000617808 98 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC004777.1-201ENST00000624317 287 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC119674.1-212ENST00000641155 993 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SRRM1P3-201ENST00000426911 2678 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AP000473.2-201ENST00000602659 1537 ntBASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
PTCHD3Q3KNS1 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 OR4F13P-202ENST00000560066 2054 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC004158.1-201ENST00000564508 4319 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RNU4-92P-201ENST00000363783 136 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RNU6-224P-201ENST00000384055 107 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RNU6-549P-201ENST00000384433 107 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 SNORD116-12-201ENST00000384468 92 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RNU6-636P-201ENST00000384598 107 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 RPS27AP11-201ENST00000402798 447 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 OR6K4P-201ENST00000423179 955 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 USP9YP11-201ENST00000427537 717 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AL161722.1-201ENST00000446972 1032 ntBASIC5.47□□□□□ -1.53
PTCHD3Q3KNS1 AC073909.1-201ENST00000447112 999 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms