Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
MSH6P52701 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.68□□□□□ -1.34
MSH6P52701 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 AL133338.2-201ENST00000604292 736 ntBASIC6.68□□□□□ -1.34
MSH6P52701 AP005019.3-201ENST00000620418 560 ntBASIC6.68□□□□□ -1.34
MSH6P52701 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH6P52701 AC025031.4-201ENST00000621248 3271 ntBASIC6.67□□□□□ -1.34
MSH6P52701 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSH6P52701 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSH6P52701 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.67□□□□□ -1.34
MSH6P52701 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 SALL4P2-201ENST00000423288 2910 ntBASIC6.67□□□□□ -1.34
MSH6P52701 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 AC083837.1-201ENST00000565297 2994 ntBASIC6.67□□□□□ -1.34
MSH6P52701 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSH6P52701 MIR670-201ENST00000390142 98 ntBASIC6.67□□□□□ -1.34
MSH6P52701 ATP5F1P3-201ENST00000397213 657 ntBASIC6.67□□□□□ -1.34
MSH6P52701 RN7SKP267-201ENST00000410381 285 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.67□□□□□ -1.34
MSH6P52701 AL356387.2-201ENST00000422272 243 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AL645608.4-201ENST00000423619 154 ntBASIC6.67□□□□□ -1.34
MSH6P52701 RPL5P2-201ENST00000429598 854 ntBASIC6.67□□□□□ -1.34
MSH6P52701 NDUFA5P1-201ENST00000433858 341 ntBASIC6.67□□□□□ -1.34
MSH6P52701 SCAND3P1-201ENST00000439854 1060 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AL450023.3-201ENST00000440592 271 ntBASIC6.67□□□□□ -1.34
MSH6P52701 MRPL35P2-201ENST00000448009 511 ntBASIC6.67□□□□□ -1.34
MSH6P52701 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH6P52701 RPL7AP52-201ENST00000458096 790 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH6P52701 IGLVIV-65-201ENST00000517313 360 ntBASIC6.67□□□□□ -1.34
MSH6P52701 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 AC025884.1-201ENST00000556034 378 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH6P52701 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH6P52701 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.67□□□□□ -1.34
MSH6P52701 MIR3158-1-201ENST00000583596 81 ntBASIC6.67□□□□□ -1.34
MSH6P52701 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 AL133243.1-201ENST00000614487 366 ntBASIC6.67□□□□□ -1.34
MSH6P52701 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
MSH6P52701 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
MSH6P52701 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
MSH6P52701 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
MSH6P52701 UGT2B26P-201ENST00000508672 1613 ntBASIC6.66□□□□□ -1.34
MSH6P52701 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.66□□□□□ -1.34
MSH6P52701 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.66□□□□□ -1.34
MSH6P52701 AC008758.3-201ENST00000507003 1829 ntBASIC6.66□□□□□ -1.34
MSH6P52701 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 SNORA71.2-201ENST00000364941 134 ntBASIC6.66□□□□□ -1.34
MSH6P52701 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.66□□□□□ -1.34
MSH6P52701 AC009237.10-201ENST00000414112 510 ntBASIC6.66□□□□□ -1.34
MSH6P52701 AC009237.5-201ENST00000414271 501 ntBASIC6.66□□□□□ -1.34
MSH6P52701 AC140479.3-201ENST00000418944 1126 ntBASIC6.66□□□□□ -1.34
MSH6P52701 LINC00993-201ENST00000420453 540 ntBASIC6.66□□□□□ -1.34
MSH6P52701 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.66□□□□□ -1.34
MSH6P52701 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC6.66□□□□□ -1.34
MSH6P52701 AC097523.2-201ENST00000435551 652 ntBASIC6.66□□□□□ -1.34
MSH6P52701 AL691482.1-201ENST00000453255 87 ntBASIC6.66□□□□□ -1.34
MSH6P52701 MTND4LP2-201ENST00000502312 285 ntBASIC6.66□□□□□ -1.34
MSH6P52701 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.66□□□□□ -1.34
MSH6P52701 RNA5SP143-201ENST00000516936 115 ntBASIC6.66□□□□□ -1.34
MSH6P52701 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.66□□□□□ -1.34
MSH6P52701 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.66□□□□□ -1.34
MSH6P52701 MIR4444-1-201ENST00000581696 74 ntBASIC6.66□□□□□ -1.34
MSH6P52701 MIR4444-2-201ENST00000584390 74 ntBASIC6.66□□□□□ -1.34
MSH6P52701 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC6.66□□□□□ -1.34
MSH6P52701 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
MSH6P52701 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSH6P52701 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
MSH6P52701 ADAM24P-201ENST00000398655 2101 ntBASIC6.65□□□□□ -1.34
MSH6P52701 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC6.65□□□□□ -1.34
MSH6P52701 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSH6P52701 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSH6P52701 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
MSH6P52701 RNA5SP317-201ENST00000410176 116 ntBASIC6.65□□□□□ -1.35
MSH6P52701 RNA5SP311-201ENST00000411290 116 ntBASIC6.65□□□□□ -1.35
MSH6P52701 NRBF2P2-201ENST00000413087 861 ntBASIC6.65□□□□□ -1.35
MSH6P52701 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.65□□□□□ -1.35
MSH6P52701 RPL19P16-201ENST00000433839 588 ntBASIC6.65□□□□□ -1.35
MSH6P52701 ACTR3P2-201ENST00000439585 1257 ntBASIC6.65□□□□□ -1.35
MSH6P52701 RPL7AP61-201ENST00000443410 636 ntBASIC6.65□□□□□ -1.35
MSH6P52701 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.65□□□□□ -1.35
MSH6P52701 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.65□□□□□ -1.35
MSH6P52701 RPS17P2-201ENST00000461663 408 ntBASIC6.65□□□□□ -1.35
MSH6P52701 AC021193.1-201ENST00000511607 420 ntBASIC6.65□□□□□ -1.35
MSH6P52701 RNA5SP315-201ENST00000516340 116 ntBASIC6.65□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms