Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 AL391684.1-202ENST00000641293 1636 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 ARHGAP42P3-201ENST00000443989 2508 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.05□□□□□ -1.44
COL18A1P39060 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.05□□□□□ -1.44
COL18A1P39060 OR5P1P-201ENST00000299512 925 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 AC008549.2-201ENST00000333482 706 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 RNU1-94P-201ENST00000362627 173 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 TMBIM7P-201ENST00000418074 855 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 BTF3P10-201ENST00000433415 495 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 ISCUP1-201ENST00000454451 448 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 AK4P6-201ENST00000505168 528 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.05□□□□□ -1.44
COL18A1P39060 AC010547.7-201ENST00000570323 333 ntBASIC6.05□□□□□ -1.44
COL18A1P39060 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC6.05□□□□□ -1.44
COL18A1P39060 LGI1-209ENST00000627699 664 ntTSL 3 BASIC6.05□□□□□ -1.44
COL18A1P39060 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL18A1P39060 AC092376.2-201ENST00000622621 4116 ntBASIC6.04□□□□□ -1.44
COL18A1P39060 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL18A1P39060 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 AL158163.1-201ENST00000603915 1649 ntBASIC6.04□□□□□ -1.44
COL18A1P39060 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 LARP1BP1-201ENST00000506036 1359 ntBASIC6.04□□□□□ -1.44
COL18A1P39060 AL161909.1-201ENST00000397390 712 ntBASIC6.04□□□□□ -1.44
COL18A1P39060 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.04□□□□□ -1.44
COL18A1P39060 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.04□□□□□ -1.44
COL18A1P39060 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL18A1P39060 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC6.03□□□□□ -1.44
COL18A1P39060 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 MIR372-201ENST00000362225 67 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 RN7SKP224-201ENST00000364140 325 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC006946.1-201ENST00000429106 328 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC6.03□□□□□ -1.44
COL18A1P39060 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.03□□□□□ -1.44
COL18A1P39060 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.03□□□□□ -1.44
COL18A1P39060 HYKK-203ENST00000563233 734 ntTSL 2 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC006133.1-201ENST00000617106 264 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC010168.2-201ENST00000562691 5428 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.03□□□□□ -1.44
COL18A1P39060 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC6.03□□□□□ -1.44
COL18A1P39060 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL18A1P39060 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL18A1P39060 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 SNORA70.4-201ENST00000365509 134 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL18A1P39060 NPM1P26-201ENST00000426339 738 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 CYCSP24-201ENST00000445119 316 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC093166.2-201ENST00000455969 1017 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 MYL12BP2-201ENST00000503948 512 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.03□□□□□ -1.44
COL18A1P39060 AC105031.1-201ENST00000518550 476 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 PSMB7P1-201ENST00000556349 514 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC113403.1-201ENST00000604910 193 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 AC090506.2-201ENST00000624521 419 ntBASIC6.03□□□□□ -1.44
COL18A1P39060 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL18A1P39060 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL18A1P39060 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
COL18A1P39060 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.02□□□□□ -1.45
COL18A1P39060 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL18A1P39060 MAPK10-328ENST00000641553 4009 ntBASIC6.02□□□□□ -1.45
COL18A1P39060 SPRR2C-201ENST00000290702 219 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms