Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC004938.1-201ENST00000438468 308 ntBASIC4.62□□□□□ -1.67
SDC1P18827 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.62□□□□□ -1.67
SDC1P18827 AC108751.2-201ENST00000469993 231 ntBASIC4.62□□□□□ -1.67
SDC1P18827 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.62□□□□□ -1.67
SDC1P18827 NPM1P29-201ENST00000483112 803 ntBASIC4.62□□□□□ -1.67
SDC1P18827 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.62□□□□□ -1.67
SDC1P18827 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.62□□□□□ -1.67
SDC1P18827 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 AC004980.4-201ENST00000513375 203 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AC117525.1-201ENST00000515228 503 ntBASIC4.62□□□□□ -1.67
SDC1P18827 SNORA70.17-201ENST00000516449 133 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AC104997.1-201ENST00000519761 717 ntBASIC4.62□□□□□ -1.67
SDC1P18827 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.62□□□□□ -1.67
SDC1P18827 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.62□□□□□ -1.67
SDC1P18827 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.62□□□□□ -1.67
SDC1P18827 MIR1269B-201ENST00000580405 75 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC4.62□□□□□ -1.67
SDC1P18827 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.62□□□□□ -1.67
SDC1P18827 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.62□□□□□ -1.67
SDC1P18827 AC015922.4-201ENST00000612568 690 ntBASIC4.62□□□□□ -1.67
SDC1P18827 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SDC1P18827 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 AC126323.6-202ENST00000568092 3511 ntBASIC4.62□□□□□ -1.67
SDC1P18827 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 AC087565.3-202ENST00000642085 1603 ntBASIC4.61□□□□□ -1.67
SDC1P18827 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 RNA5SP435-201ENST00000364044 108 ntBASIC4.61□□□□□ -1.67
SDC1P18827 SNORA70-201ENST00000384436 135 ntBASIC4.61□□□□□ -1.67
SDC1P18827 RNU2-22P-201ENST00000411266 212 ntBASIC4.61□□□□□ -1.67
SDC1P18827 RN7SKP273-201ENST00000411392 314 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 GTF2IP5-201ENST00000414608 731 ntBASIC4.61□□□□□ -1.67
SDC1P18827 GJA6P-201ENST00000415117 1042 ntBASIC4.61□□□□□ -1.67
SDC1P18827 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 OR13Z1P-201ENST00000416141 834 ntBASIC4.61□□□□□ -1.67
SDC1P18827 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 AC093414.1-201ENST00000434712 514 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.61□□□□□ -1.67
SDC1P18827 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.61□□□□□ -1.67
SDC1P18827 RAB28P3-201ENST00000448325 597 ntBASIC4.61□□□□□ -1.67
SDC1P18827 OTX2P1-201ENST00000450956 354 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL445433.1-201ENST00000457507 257 ntBASIC4.61□□□□□ -1.67
SDC1P18827 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 RN7SL591P-201ENST00000496150 292 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 RN7SKP46-201ENST00000515942 234 ntBASIC4.61□□□□□ -1.67
SDC1P18827 SEC11B-201ENST00000518383 499 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SDC1P18827 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 AC008126.1-201ENST00000549019 480 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 AC067805.1-201ENST00000559344 470 ntBASIC4.61□□□□□ -1.67
SDC1P18827 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.61□□□□□ -1.67
SDC1P18827 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.61□□□□□ -1.67
SDC1P18827 AC006116.3-201ENST00000592968 361 ntBASIC4.61□□□□□ -1.67
SDC1P18827 RNF138P2-201ENST00000603490 592 ntBASIC4.61□□□□□ -1.67
SDC1P18827 IMMP1LP1-201ENST00000605170 488 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AL451049.1-201ENST00000608672 497 ntBASIC4.61□□□□□ -1.67
SDC1P18827 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SDC1P18827 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.61□□□□□ -1.67
SDC1P18827 AL133268.1-201ENST00000405676 1401 ntBASIC4.61□□□□□ -1.67
SDC1P18827 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDC1P18827 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms