Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MIR6748-201ENST00000610433 71 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC009159.2-201ENST00000617603 606 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AL035461.2-201ENST00000619201 524 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC068057.2-201ENST00000624047 895 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC019072.1-201ENST00000604535 1551 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 AC109780.1-201ENST00000451768 1344 ntBASIC5.46□□□□□ -1.54
VPS4AQ9UN37 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS4AQ9UN37 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AL360270.2-201ENST00000562952 5985 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 USP9YP21-201ENST00000420603 432 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 OR10T1P-201ENST00000424327 947 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AL772161.1-201ENST00000439130 476 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC245047.2-201ENST00000441060 530 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 RPL5P25-201ENST00000441148 775 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 RPL7P61-201ENST00000451721 751 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CALM1P2-201ENST00000452941 448 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC147055.3-201ENST00000510547 851 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 EIF4A2P5-201ENST00000529914 499 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AL049872.1-201ENST00000556323 322 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC234772.3-201ENST00000602277 528 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 MIR7155-201ENST00000615925 56 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC132825.7-201ENST00000638744 335 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 AC093591.2-201ENST00000565254 3843 ntBASIC5.45□□□□□ -1.54
VPS4AQ9UN37 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS4AQ9UN37 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 AC003973.3-201ENST00000624863 2822 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 RN7SKP185-201ENST00000362813 326 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 MT-TP-201ENST00000387461 68 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 MIR1286-201ENST00000408112 78 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 DPPA2P3-201ENST00000411853 655 ntBASIC5.44□□□□□ -1.54
VPS4AQ9UN37 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS4AQ9UN37 AL354890.1-201ENST00000413730 346 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms