Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC005868.1-201ENST00000536421 331 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 PCNPP1-201ENST00000552501 511 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AP001784.1-201ENST00000624107 428 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC104623.2-202ENST00000623477 4002 ntBASIC4.94□□□□□ -1.62
LHX3Q9UBR4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.94□□□□□ -1.62
LHX3Q9UBR4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC107021.2-201ENST00000567714 2095 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC020633.1-201ENST00000468439 2247 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC010132.2-201ENST00000295493 1043 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNA5SP87-201ENST00000384155 118 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-1320P-201ENST00000390838 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-1269P-201ENST00000391139 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNA5SP113-201ENST00000410486 84 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RPS20P25-201ENST00000412447 352 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC007064.3-201ENST00000422608 359 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AL360081.1-201ENST00000428299 555 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC008072.1-201ENST00000434254 824 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC234781.3-201ENST00000452540 973 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-599P-201ENST00000459383 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-1193P-201ENST00000459461 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC092324.1-201ENST00000468671 324 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 OR9N1P-201ENST00000491296 333 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ASNSP4-201ENST00000511103 447 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 MIR4737-201ENST00000583979 81 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC004948.1-201ENST00000609858 672 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 Z95327.3-201ENST00000610385 572 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC007497.1-201ENST00000610421 561 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-368P-201ENST00000620928 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 RNU6-538P-201ENST00000622329 107 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AC100778.3-201ENST00000580060 1750 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.93□□□□□ -1.62
LHX3Q9UBR4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
LHX3Q9UBR4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 RNA5SP105-201ENST00000391123 113 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AC013470.3-201ENST00000420252 1194 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AL645608.4-201ENST00000423619 154 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 NPM1P26-201ENST00000426339 738 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 OR2B7P-201ENST00000429302 934 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 BTF3P6-201ENST00000448054 499 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AC091685.2-201ENST00000454924 864 ntBASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.92□□□□□ -1.62
LHX3Q9UBR4 OR7H2P-201ENST00000513483 306 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms