Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.1□□□□□ -1.43
TRIM39Q9HCM9 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC096921.2-201ENST00000561507 1916 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 CAP1P2-201ENST00000417455 1409 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 HDAC1P2-201ENST00000453661 1398 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 SLC10A5P1-201ENST00000379063 1306 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC087359.1-201ENST00000508335 1740 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RN7SKP186-201ENST00000365371 303 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RNU6-317P-201ENST00000384031 107 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP115-201ENST00000411160 107 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 OR51A3P-201ENST00000413596 924 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 TRBV24OR9-2-201ENST00000416632 435 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RPL35AP31-201ENST00000418340 337 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC019178.2-201ENST00000423595 505 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RPS27AP3-201ENST00000453803 454 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL133244.1-201ENST00000456007 258 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC008885.2-201ENST00000509506 930 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 CR383658.1-201ENST00000514609 734 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC138832.1-201ENST00000522871 556 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 OR5AZ1P-201ENST00000527448 943 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 OR6M2P-201ENST00000529831 871 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 HMGB1P42-201ENST00000532126 553 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AP002373.2-201ENST00000541631 1060 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC090751.1-201ENST00000566966 267 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC119751.7-201ENST00000600494 245 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AL031985.2-201ENST00000600955 480 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC090116.1-201ENST00000615679 446 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 uc_338.9-201ENST00000617424 182 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC069209.1-201ENST00000619282 651 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 Z69908.1-201ENST00000622603 247 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 FP325313.1-201ENST00000638228 703 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 CASC19-222ENST00000641321 1173 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 AC068769.1-201ENST00000474767 2426 ntBASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC6.09□□□□□ -1.43
TRIM39Q9HCM9 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.09□□□□□ -1.44
TRIM39Q9HCM9 AC022325.1-201ENST00000502748 2199 ntBASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 AOX3P-204ENST00000491025 2107 ntBASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 AP000526.1-201ENST00000603308 1388 ntBASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 RNU1-134P-201ENST00000362935 165 ntBASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 RNU6-931P-201ENST00000363850 107 ntBASIC6.08□□□□□ -1.44
TRIM39Q9HCM9 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms