Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 MIR483-201ENST00000385070 76 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 RPL23AP93-201ENST00000440847 484 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC073073.1-201ENST00000493920 463 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 NIFKP7-201ENST00000503365 834 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 SNORA74D-201ENST00000516404 141 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 SNORA74C-1-201ENST00000580726 201 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 MIR3944-201ENST00000581277 108 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC011477.5-201ENST00000586571 259 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 AC023043.4-201ENST00000612081 449 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 ICE2P1-201ENST00000512800 1849 ntBASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SHANK3Q9BYB0 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
SHANK3Q9BYB0 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.09□□□□□ -1.44
SHANK3Q9BYB0 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SHANK3Q9BYB0 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SHANK3Q9BYB0 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 RGS17P1-201ENST00000423358 553 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 SCP2-206ENST00000430330 938 ntTSL 2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 SCARNA10-201ENST00000459255 330 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC041039.1-201ENST00000485656 536 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC027807.1-201ENST00000559921 996 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC022146.1-201ENST00000595307 847 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AP001160.4-201ENST00000596971 382 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AL035461.2-201ENST00000619201 524 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC011815.3-201ENST00000624194 473 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 UGT2B26P-201ENST00000508672 1613 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 RNA5SP453-201ENST00000362503 119 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AL022722.2-201ENST00000402519 180 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 RN7SL132P-201ENST00000478131 296 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 AC108475.1-201ENST00000507880 950 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 MIR492-201ENST00000638676 116 ntBASIC6.08□□□□□ -1.44
SHANK3Q9BYB0 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 OR8G2P-201ENST00000412796 908 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AL132765.1-201ENST00000434165 553 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 ARF4P1-201ENST00000605447 541 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 OR7A19P-201ENST00000608051 733 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AC018816.2-201ENST00000621460 353 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AC006453.5-201ENST00000636451 619 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms