Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 TPT1P2-201ENST00000413105 503 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AP001804.2-201ENST00000533932 910 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AP005019.3-201ENST00000620418 560 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC135352.1-201ENST00000506173 1418 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 RNA5SP130-201ENST00000364431 114 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC007618.1-201ENST00000366455 732 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC092647.1-201ENST00000420654 287 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 RN7SKP13-201ENST00000515933 244 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL442067.2-201ENST00000614033 363 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL391261.4-201ENST00000616012 481 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL391684.1-202ENST00000641293 1636 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 ZNF285B-201ENST00000561698 1767 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC068769.1-201ENST00000474767 2426 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL590704.1-201ENST00000402856 794 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 RN7SKP17-201ENST00000411242 351 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AL390879.1-201ENST00000439143 386 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 BX842559.2-201ENST00000451418 605 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 VN1R105P-201ENST00000486595 910 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC007342.8-201ENST00000623278 678 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 AC024023.1-201ENST00000624530 922 ntBASIC4.48□□□□□ -1.69
VPS13AQ96RL7 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 ZNF566-204ENST00000434377 5197 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS13AQ96RL7 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AP001804.1-201ENST00000526868 919 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 SNORA74C-1-201ENST00000580726 201 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 OR5H1-202ENST00000641874 5999 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 EIF2AP4-201ENST00000424793 1781 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 MRPL50P1-201ENST00000431951 384 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 BTF3P10-201ENST00000433415 495 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC025164.1-201ENST00000496249 478 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AP000542.3-201ENST00000623391 6114 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 ZNF833P-201ENST00000424938 1494 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC006042.3-201ENST00000454684 1469 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AP000619.3-201ENST00000535634 1127 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 NDUFB4P11-201ENST00000560510 395 ntBASIC4.47□□□□□ -1.69
VPS13AQ96RL7 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.47□□□□□ -1.69
VPS13AQ96RL7 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
VPS13AQ96RL7 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.46□□□□□ -1.69
VPS13AQ96RL7 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.46□□□□□ -1.69
VPS13AQ96RL7 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC4.46□□□□□ -1.69
VPS13AQ96RL7 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms