Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC010493.1-201ENST00000513479 292 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 GAPDHP62-201ENST00000515313 990 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SCARNA6-201ENST00000515982 265 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.704-201ENST00000516851 102 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC022861.1-201ENST00000522981 663 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AP003181.2-201ENST00000528941 181 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ADI1P3-201ENST00000549509 470 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC091304.5-201ENST00000568969 158 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ACTG1P15-201ENST00000570019 1063 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC103792.1-201ENST00000603591 919 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 COX6CP16-201ENST00000603667 216 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC092960.1-201ENST00000604762 351 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 COX6CP4-201ENST00000605798 228 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC122710.3-201ENST00000606566 541 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RN7SL126P-201ENST00000616400 299 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC002553.4-201ENST00000616896 331 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 DLST-216ENST00000626051 252 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC099654.6-201ENST00000636487 512 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 PRNCR1-201ENST00000635449 12727 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SMG1P7-201ENST00000565246 2704 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 NLRP3P1-201ENST00000622303 1785 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC011592.1-201ENST00000624647 3634 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CCT4P2-201ENST00000233836 1548 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL355377.1-201ENST00000621125 1653 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC009237.3-203ENST00000442128 3551 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 GNG5P1-201ENST00000255500 204 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RN7SKP55-201ENST00000364888 307 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RNU6-114P-201ENST00000384704 105 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL357752.1-201ENST00000412817 349 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC008753.1-201ENST00000423096 284 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL031736.2-201ENST00000426573 787 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL589872.1-201ENST00000426602 288 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 GAS5-211ENST00000432536 959 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CYCSP12-201ENST00000437729 300 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 IGKV1OR10-1-201ENST00000442306 329 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AP000542.1-201ENST00000448473 371 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 MTND5P20-201ENST00000448677 143 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 MTND3P10-201ENST00000450967 341 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 HIGD1AP8-201ENST00000453927 274 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL359385.1-201ENST00000456509 365 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 GAPDHP53-201ENST00000458397 924 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 IGKV1OR22-5-201ENST00000458718 354 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RPL38P1-201ENST00000460914 211 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC099340.1-201ENST00000475247 599 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms