Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTND3P23-201ENST00000431980 347 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 UBE2FP3-201ENST00000436366 524 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC092106.2-201ENST00000436597 487 ntBASIC6.15□□□□□ -1.42
RNF4P78317 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 TXNP5-201ENST00000441043 315 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 UBE2V1P7-201ENST00000446395 340 ntBASIC6.15□□□□□ -1.42
RNF4P78317 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 AC010307.1-201ENST00000467206 836 ntBASIC6.15□□□□□ -1.42
RNF4P78317 RPL7P38-201ENST00000488396 739 ntBASIC6.15□□□□□ -1.42
RNF4P78317 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 AC015524.1-201ENST00000491585 472 ntBASIC6.15□□□□□ -1.42
RNF4P78317 FCF1P3-201ENST00000496394 590 ntBASIC6.15□□□□□ -1.42
RNF4P78317 SNX5P1-201ENST00000505757 1041 ntBASIC6.15□□□□□ -1.42
RNF4P78317 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC6.15□□□□□ -1.42
RNF4P78317 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 RNU6-528P-201ENST00000516926 100 ntBASIC6.15□□□□□ -1.42
RNF4P78317 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 AC138832.1-201ENST00000522871 556 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.15□□□□□ -1.42
RNF4P78317 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.15□□□□□ -1.42
RNF4P78317 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.15□□□□□ -1.42
RNF4P78317 BNIP3P33-201ENST00000598912 569 ntBASIC6.15□□□□□ -1.42
RNF4P78317 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 TAS2R6P-201ENST00000605022 826 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC114477.1-201ENST00000605097 605 ntBASIC6.15□□□□□ -1.42
RNF4P78317 RPL12P48-201ENST00000605620 304 ntBASIC6.15□□□□□ -1.42
RNF4P78317 SNORD96A-201ENST00000606577 79 ntBASIC6.15□□□□□ -1.42
RNF4P78317 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 AC004241.2-201ENST00000614562 444 ntBASIC6.15□□□□□ -1.42
RNF4P78317 CR381653.2-201ENST00000624041 768 ntBASIC6.15□□□□□ -1.42
RNF4P78317 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.15□□□□□ -1.42
RNF4P78317 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
RNF4P78317 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.15□□□□□ -1.42
RNF4P78317 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
RNF4P78317 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
RNF4P78317 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
RNF4P78317 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.15□□□□□ -1.43
RNF4P78317 CLCA3P-203ENST00000490028 2781 ntBASIC6.15□□□□□ -1.43
RNF4P78317 AL596244.1-201ENST00000567068 3779 ntBASIC6.15□□□□□ -1.43
RNF4P78317 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
RNF4P78317 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
RNF4P78317 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
RNF4P78317 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 AC007485.2-201ENST00000623493 1667 ntBASIC6.14□□□□□ -1.43
RNF4P78317 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
RNF4P78317 FAM32BP-201ENST00000344033 333 ntBASIC6.14□□□□□ -1.43
RNF4P78317 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
RNF4P78317 RNU5F-6P-201ENST00000362979 116 ntBASIC6.14□□□□□ -1.43
RNF4P78317 Y_RNA.256-201ENST00000364594 104 ntBASIC6.14□□□□□ -1.43
RNF4P78317 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
RNF4P78317 U3.52-201ENST00000384034 216 ntBASIC6.14□□□□□ -1.43
RNF4P78317 Y_RNA.582-201ENST00000391023 95 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC003045.1-201ENST00000398779 713 ntBASIC6.14□□□□□ -1.43
RNF4P78317 EI24P3-201ENST00000399046 1062 ntBASIC6.14□□□□□ -1.43
RNF4P78317 RPL17P12-201ENST00000413391 526 ntBASIC6.14□□□□□ -1.43
RNF4P78317 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 Z82198.3-201ENST00000421145 199 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC104843.2-201ENST00000427666 297 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 GAPDHP19-201ENST00000431768 1005 ntBASIC6.14□□□□□ -1.43
RNF4P78317 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.14□□□□□ -1.43
RNF4P78317 RPL12P49-201ENST00000441100 121 ntBASIC6.14□□□□□ -1.43
RNF4P78317 COL11A2P1-205ENST00000441798 676 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AL662791.1-201ENST00000441992 928 ntBASIC6.14□□□□□ -1.43
RNF4P78317 GAPDHP37-201ENST00000442317 968 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC6.14□□□□□ -1.43
RNF4P78317 AC239367.2-201ENST00000447309 705 ntBASIC6.14□□□□□ -1.43
RNF4P78317 TVP23CP1-201ENST00000450317 639 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.14□□□□□ -1.43
RNF4P78317 MTND2P24-201ENST00000453434 806 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC109462.1-201ENST00000491087 368 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC108941.1-201ENST00000502853 530 ntBASIC6.14□□□□□ -1.43
RNF4P78317 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.14□□□□□ -1.43
RNF4P78317 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms