Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SMARCA1P28370 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.2□□□□□ -1.42
SMARCA1P28370 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 AC116562.1-201ENST00000485355 781 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.2□□□□□ -1.42
SMARCA1P28370 RFESD-208ENST00000513950 464 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AC139103.1-201ENST00000534696 1030 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC6.2□□□□□ -1.42
SMARCA1P28370 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 AL022067.1-201ENST00000602426 454 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 RPP40P2-201ENST00000603596 712 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.2□□□□□ -1.42
SMARCA1P28370 RNA5SP439-201ENST00000617595 124 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 AC006927.2-201ENST00000639256 389 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 OR52B5P-202ENST00000641118 1110 ntBASIC6.2□□□□□ -1.42
SMARCA1P28370 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SMARCA1P28370 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
SMARCA1P28370 AC019072.1-201ENST00000604535 1551 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.19□□□□□ -1.42
SMARCA1P28370 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC104964.3-201ENST00000606115 2860 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC079298.1-201ENST00000625026 1619 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RNU5B-4P-201ENST00000363508 111 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC234772.1-201ENST00000377927 937 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 SNORA67-201ENST00000384423 137 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 ANAPC10P1-201ENST00000395991 556 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 OR4K12P-201ENST00000406538 961 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 SNORA79B-201ENST00000410557 148 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RPL26P37-201ENST00000411983 438 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.19□□□□□ -1.42
SMARCA1P28370 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC009784.1-201ENST00000426484 460 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC124944.2-201ENST00000429866 1242 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC6.19□□□□□ -1.42
SMARCA1P28370 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC6.19□□□□□ -1.42
SMARCA1P28370 RPS7P2-201ENST00000435134 607 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC092447.2-201ENST00000435487 669 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.19□□□□□ -1.42
SMARCA1P28370 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 RPL5P13-201ENST00000462840 709 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RPL21P47-201ENST00000483696 477 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC097486.1-201ENST00000515331 210 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RNU6-941P-201ENST00000516346 108 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC6.19□□□□□ -1.42
SMARCA1P28370 EEF1A1P37-201ENST00000522748 715 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC109635.6-201ENST00000525487 1113 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SMARCA1P28370 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC087888.1-201ENST00000550884 1254 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.19□□□□□ -1.42
SMARCA1P28370 NMNAT1P5-201ENST00000559657 841 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 RPL10P14-201ENST00000565265 298 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AC106734.1-201ENST00000568646 663 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC069307.1-201ENST00000602820 447 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AP002802.2-201ENST00000605877 235 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 AL512624.1-201ENST00000613638 469 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 MIR6826-201ENST00000617808 98 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 MTND5P11-201ENST00000511037 1812 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SMARCA1P28370 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 CASC19-260ENST00000641828 2001 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SMARCA1P28370 AC235565.1-201ENST00000456962 1325 ntBASIC6.19□□□□□ -1.42
SMARCA1P28370 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.19□□□□□ -1.42
SMARCA1P28370 PABPC1P6-201ENST00000445594 1829 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 RNU1-146P-201ENST00000364015 165 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC005522.1-201ENST00000395416 346 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 UBE2V1P9-201ENST00000414760 368 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.18□□□□□ -1.42
SMARCA1P28370 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC006065.1-201ENST00000422539 802 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC108075.1-201ENST00000424692 529 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 ZNF736P7Y-201ENST00000425158 820 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC093716.1-201ENST00000435923 377 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 PA2G4P6-201ENST00000438325 1197 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.18□□□□□ -1.42
SMARCA1P28370 MTND1P33-201ENST00000446251 917 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 MTND2P8-201ENST00000450555 1025 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms