Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC145350.1-201ENST00000567426 208 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC027455.1-201ENST00000574104 594 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 MTND3P13-201ENST00000574391 343 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 GAS5-AS1-201ENST00000602767 694 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 FO393422.1-201ENST00000603908 708 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AL133481.2-203ENST00000607558 139 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC092954.1-201ENST00000609121 445 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC004948.1-201ENST00000609858 672 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC021755.4-201ENST00000616620 456 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AL035461.2-201ENST00000619201 524 ntBASIC5.74□□□□□ -1.49
DKK3Q9UBP4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
DKK3Q9UBP4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RNA5SP242-201ENST00000364171 118 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MIR130A-201ENST00000385274 89 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RPL11P3-201ENST00000395256 523 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC119751.3-201ENST00000399720 670 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 GAPDHP42-201ENST00000406848 981 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MIR1178-201ENST00000408396 91 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RN7SKP279-201ENST00000411383 298 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MTCO1P43-201ENST00000431831 488 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MED6P1-201ENST00000439659 713 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL450996.1-201ENST00000445574 1202 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL157884.3-201ENST00000448273 1184 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MEMO1P4-201ENST00000453590 386 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RPSAP39-201ENST00000467439 883 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL136038.1-201ENST00000497246 351 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 SUMO1P1-201ENST00000497904 306 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC021087.2-201ENST00000504656 1203 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 IGKV2-18-201ENST00000522607 343 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL049872.1-201ENST00000556323 322 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 MIR3176-201ENST00000582210 90 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL513327.3-201ENST00000602618 469 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC005021.1-201ENST00000608730 355 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC015922.4-201ENST00000612568 690 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL133370.2-201ENST00000619934 439 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL691477.1-201ENST00000624398 162 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AL390318.1-201ENST00000624564 687 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 YES1P1-201ENST00000418510 1628 ntBASIC5.73□□□□□ -1.49
DKK3Q9UBP4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.73□□□□□ -1.49
DKK3Q9UBP4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms