Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ACTR3P2-201ENST00000439585 1257 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AC106806.2-201ENST00000509365 500 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 AL121932.1-201ENST00000605542 214 ntBASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SHANK3Q9BYB0 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 MAPK10-349ENST00000641767 3661 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AC008033.1-201ENST00000216407 1162 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 SNORA62.3-201ENST00000365110 153 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 RPL21P67-201ENST00000402896 478 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AL356387.2-201ENST00000422272 243 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AC004980.3-201ENST00000447046 365 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 RN7SL558P-201ENST00000497468 299 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 MIR2116-201ENST00000517221 80 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 RN7SL652P-201ENST00000577769 300 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AL352984.2-202ENST00000613699 155 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AP003497.2-201ENST00000624220 967 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 ZNF137P-201ENST00000456718 1920 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 AL121950.1-201ENST00000624993 2077 ntBASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SHANK3Q9BYB0 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 RNA5SP317-201ENST00000410176 116 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 RNA5SP311-201ENST00000411290 116 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 RNA5SP315-201ENST00000516340 116 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 RNA5SP312-201ENST00000517068 116 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 RN7SL339P-201ENST00000580597 296 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AC090181.2-201ENST00000602975 672 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AC090017.1-201ENST00000548612 1779 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AL121657.1-201ENST00000327215 531 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 TMSB10P2-201ENST00000416049 131 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AC021876.1-201ENST00000425959 359 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 OR52E3P-201ENST00000452083 936 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 AL049536.1-201ENST00000625043 744 ntBASIC6.11□□□□□ -1.43
SHANK3Q9BYB0 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 DHX9P1-201ENST00000436565 3076 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AC021146.4-201ENST00000309229 279 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 RNA5SP372-201ENST00000390836 115 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AL583835.1-201ENST00000399570 407 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 OR13Z1P-201ENST00000416141 834 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 RRM2P4-201ENST00000441721 562 ntBASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.1□□□□□ -1.43
SHANK3Q9BYB0 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.43
SHANK3Q9BYB0 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms