Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC011445.2-201ENST00000599274 173 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC116447.1-201ENST00000613153 453 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC007204.2-201ENST00000615022 616 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 MIR6837-201ENST00000620884 64 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AL049767.1-202ENST00000637826 242 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 LINC01355-201ENST00000566551 5444 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 SPATA2P1-201ENST00000431223 2055 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 PHKBP1-201ENST00000450951 1951 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC011447.7-201ENST00000624228 1590 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL445437.1-201ENST00000623157 3087 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 SNORA2.3-201ENST00000383920 135 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL512422.1-201ENST00000407033 553 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC006065.1-201ENST00000422539 802 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 RN7SL443P-201ENST00000464331 290 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 RPL7P39-201ENST00000481157 744 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 OR8A2P-201ENST00000528631 952 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AGGF1P9-201ENST00000561884 913 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 AC009303.3-201ENST00000591103 736 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL359513.1-201ENST00000614364 557 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 RPSAP73-201ENST00000614820 330 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.09□□□□□ -1.59
VPS39Q96JC1 MIR4302-201ENST00000638058 60 ntBASIC5.09□□□□□ -1.59
VPS39Q96JC1 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
VPS39Q96JC1 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
VPS39Q96JC1 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
VPS39Q96JC1 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC021242.1-201ENST00000507315 2035 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 RNA5SP132-201ENST00000364725 118 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
VPS39Q96JC1 OR3A2-201ENST00000408891 1076 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 CHEK2P5-201ENST00000423877 246 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AJ239321.1-201ENST00000424255 564 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AL158073.1-201ENST00000426848 1104 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 MTCO1P45-201ENST00000431457 267 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 SPRYD7P1-201ENST00000443861 570 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 BTF3P6-201ENST00000448054 499 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC093166.2-201ENST00000455969 1017 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 RPL7AP52-201ENST00000458096 790 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 APOOP2-201ENST00000461561 539 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 RN7SL441P-201ENST00000492388 296 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC073073.1-201ENST00000493920 463 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC147055.1-201ENST00000509261 750 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 BX510359.5-201ENST00000515651 304 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 RNA5SP362-201ENST00000516048 118 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC134349.2-201ENST00000535136 910 ntBASIC5.08□□□□□ -1.6
VPS39Q96JC1 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.08□□□□□ -1.6
VPS39Q96JC1 AC125612.1-201ENST00000547580 377 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms