Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AP001157.1-201ENST00000550837 2339 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC007389.2-201ENST00000434630 306 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 TCEA1P3-201ENST00000443005 880 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC007688.1-201ENST00000475592 759 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC116562.1-201ENST00000485355 781 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 NPM1P41-201ENST00000512920 831 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC091979.2-201ENST00000607514 214 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 OR2L1P-202ENST00000641567 1023 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 RNA5SP151-201ENST00000365632 117 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 SNRPFP1-201ENST00000414761 252 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC008481.1-201ENST00000463278 396 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 OR7E10P-201ENST00000526420 991 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 PYM1-205ENST00000547925 499 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC096577.2-201ENST00000611455 153 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ACTR3BP5-201ENST00000448440 1479 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC026403.1-201ENST00000518938 295 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC116553.2-201ENST00000564203 463 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AP005901.4-201ENST00000577336 569 ntBASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS13CQ709C8 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS13CQ709C8 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 NDUFB4P4-201ENST00000404822 243 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 RPL12P9-201ENST00000412942 488 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC018644.1-201ENST00000429934 551 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 MRPL50P1-201ENST00000431951 384 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC016559.2-201ENST00000510759 359 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 OR5BC1P-201ENST00000529327 739 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC015912.2-201ENST00000571053 181 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 MBTD1-203ENST00000415868 5099 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS13CQ709C8 PTMAP5-201ENST00000393073 333 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC140479.3-201ENST00000418944 1126 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 RPL23AP52-201ENST00000439311 478 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC016772.1-201ENST00000444170 1261 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC104651.2-201ENST00000447549 528 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC010460.1-201ENST00000507087 466 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 RNA5SP49-201ENST00000516450 115 ntBASIC3.73□□□□□ -1.81
VPS13CQ709C8 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS13CQ709C8 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms