Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC023158.1-201ENST00000561632 1025 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 MTATP6P2-201ENST00000603319 678 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AL139022.2-201ENST00000606934 443 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AL391834.1-201ENST00000609609 560 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 MIR6133-201ENST00000617057 108 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AL136228.1-201ENST00000622221 319 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AC010329.2-201ENST00000595195 2737 ntBASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
PDLIM3Q53GG5 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 PSG10P-201ENST00000501199 1500 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RAD1P1-201ENST00000231383 813 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL512430.2-201ENST00000406786 339 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 SNRPEP6-201ENST00000407465 277 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 OR6C64P-201ENST00000419708 825 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC023141.8-201ENST00000442554 208 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 GXYLT1P1-201ENST00000446657 490 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CALM1P2-201ENST00000452941 448 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CLIC4P1-201ENST00000453177 535 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 GEMIN2P1-201ENST00000454246 752 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC021205.1-201ENST00000468797 348 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RPL7AP6-201ENST00000477943 801 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC020779.1-201ENST00000478757 796 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 NPM1P29-201ENST00000483112 803 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RPS7P6-201ENST00000485777 579 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RN7SL205P-201ENST00000490174 284 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CAB39P1-201ENST00000502277 460 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CDH12P2-201ENST00000504393 298 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC074255.1-201ENST00000511259 501 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 MTCYBP19-201ENST00000517463 1124 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 IGHV3-63-201ENST00000518422 341 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CDC42P3-201ENST00000518493 633 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AP004607.2-201ENST00000533949 322 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC019322.1-201ENST00000571869 389 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC010503.3-201ENST00000594355 540 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 FKBP1AP1-201ENST00000594588 318 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 BNIP3P27-201ENST00000599991 412 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC024933.1-201ENST00000608472 348 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL139124.1-201ENST00000609123 421 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL162574.1-201ENST00000615702 950 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AC015908.5-201ENST00000623289 343 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 FRG1DP-201ENST00000635586 771 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AL590396.2-201ENST00000636511 1041 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 HSPD1P11-201ENST00000508643 1702 ntBASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
PDLIM3Q53GG5 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms