Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 KNOP1P3-201ENST00000446933 426 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 AP002981.1-201ENST00000517692 975 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC090151.1-201ENST00000520784 730 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.6□□□□□ -1.83
FOXA3P55318 IGKV2-4-201ENST00000523070 340 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 MTND6P33-201ENST00000571794 183 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 SNORA74C-1-201ENST00000580726 201 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 AC209154.1-201ENST00000582156 337 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA3P55318 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 AC008759.1-201ENST00000589783 983 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 AL023881.1-201ENST00000621088 301 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 AC073592.6-201ENST00000624271 415 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 BMS1P21-201ENST00000634565 365 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 CASC19-222ENST00000641321 1173 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.6□□□□□ -1.83
FOXA3P55318 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 Z98755.1-201ENST00000407015 1384 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA3P55318 MAPK10-304ENST00000641341 3984 ntBASIC3.6□□□□□ -1.83
FOXA3P55318 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
FOXA3P55318 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 AL121950.1-201ENST00000624993 2077 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
FOXA3P55318 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 ALB-209ENST00000503124 1741 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL133243.3-201ENST00000617415 3004 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA3P55318 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA3P55318 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
FOXA3P55318 MIR600-201ENST00000385007 98 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL021331.1-201ENST00000402817 582 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AL136116.2-201ENST00000404020 785 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 SDHDP6-201ENST00000414693 480 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 OR2AM1P-201ENST00000422137 422 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 RPS12P5-201ENST00000423449 371 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC012075.1-201ENST00000436549 580 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 GEMIN8P3-201ENST00000445417 720 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 RPL7P45-201ENST00000455851 743 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 RPL35AP19-201ENST00000469425 329 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC012158.1-204ENST00000483430 465 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 RN7SL214P-201ENST00000487317 265 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 EIF4E2P2-201ENST00000492033 736 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 RNU6-709P-201ENST00000517257 104 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC134349.2-201ENST00000535136 910 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC069240.1-201ENST00000548774 375 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA3P55318 NOP10-202ENST00000557912 436 ntTSL 2 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC3.59□□□□□ -1.83
FOXA3P55318 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA3P55318 MIR1273E-201ENST00000581165 102 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC134669.1-201ENST00000581275 672 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 MIR4505-201ENST00000582238 73 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.59□□□□□ -1.83
FOXA3P55318 AL158196.1-201ENST00000616786 434 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AL669942.2-201ENST00000620352 697 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 AC138627.1-204ENST00000641894 765 ntBASIC3.59□□□□□ -1.83
FOXA3P55318 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
FOXA3P55318 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.84
FOXA3P55318 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
FOXA3P55318 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.59□□□□□ -1.84
FOXA3P55318 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
FOXA3P55318 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
FOXA3P55318 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC3.59□□□□□ -1.84
FOXA3P55318 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA3P55318 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms