Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.11□□□□□ -1.59
COL4A4P53420 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 AC105074.1-201ENST00000623380 3095 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 ZFRP1-201ENST00000457579 2970 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL4A4P53420 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.11□□□□□ -1.59
COL4A4P53420 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
COL4A4P53420 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL4A4P53420 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 RNA5SP171-201ENST00000391071 115 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 RPL32P23-201ENST00000397237 405 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 LINC01881-201ENST00000416103 412 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 CKS1BP6-201ENST00000424932 240 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 AC006946.1-201ENST00000429106 328 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 OR4C10P-201ENST00000434991 931 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 TCEA1P3-201ENST00000443005 880 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 Z95327.1-201ENST00000446082 482 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.11□□□□□ -1.59
COL4A4P53420 AC073073.1-201ENST00000493920 463 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.11□□□□□ -1.59
COL4A4P53420 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.11□□□□□ -1.59
COL4A4P53420 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.11□□□□□ -1.59
COL4A4P53420 AC093227.2-201ENST00000589357 285 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 AC100778.3-201ENST00000580060 1750 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.11□□□□□ -1.59
COL4A4P53420 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL4A4P53420 AC008758.3-201ENST00000507003 1829 ntBASIC5.11□□□□□ -1.59
COL4A4P53420 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
COL4A4P53420 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.1□□□□□ -1.59
COL4A4P53420 STX3-208ENST00000641815 3236 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 SOCS5P3-201ENST00000425115 1576 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 AL445189.1-201ENST00000405722 338 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 U3.35-201ENST00000408405 208 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 NRBF2P2-201ENST00000413087 861 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 RPL35AP21-201ENST00000437667 333 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.1□□□□□ -1.59
COL4A4P53420 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.1□□□□□ -1.59
COL4A4P53420 PPP1R11P1-201ENST00000486095 376 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 AC105031.1-201ENST00000518550 476 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.1□□□□□ -1.59
COL4A4P53420 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.1□□□□□ -1.59
COL4A4P53420 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 AC244517.3-201ENST00000616254 1235 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.1□□□□□ -1.59
COL4A4P53420 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 AL592182.3-201ENST00000642132 3304 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
COL4A4P53420 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.1□□□□□ -1.59
COL4A4P53420 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 AL122126.1-201ENST00000546905 1318 ntBASIC5.1□□□□□ -1.59
COL4A4P53420 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.1□□□□□ -1.59
COL4A4P53420 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.1□□□□□ -1.59
COL4A4P53420 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
COL4A4P53420 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.1□□□□□ -1.59
COL4A4P53420 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL4A4P53420 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 CR1-203ENST00000367051 7469 ntTSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL4A4P53420 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL4A4P53420 SNORA70.4-201ENST00000365509 134 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL4A4P53420 AL022722.2-201ENST00000402519 180 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 AL357515.1-201ENST00000402967 542 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.09□□□□□ -1.59
COL4A4P53420 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.09□□□□□ -1.59
COL4A4P53420 ACTR3P2-201ENST00000439585 1257 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 RPL21P126-201ENST00000470049 478 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.09□□□□□ -1.59
COL4A4P53420 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 AL359219.2-201ENST00000555184 348 ntBASIC5.09□□□□□ -1.59
COL4A4P53420 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL4A4P53420 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
COL4A4P53420 RAD17P1-201ENST00000418130 2042 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms