Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC239798.3-201ENST00000454459 408 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC093166.4-201ENST00000457867 318 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 NXT1P1-201ENST00000458481 316 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 SNORD125-201ENST00000459538 96 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 RN7SL273P-201ENST00000481561 299 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 ATP5LP5-201ENST00000483050 299 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC093720.1-201ENST00000505681 714 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC010376.1-201ENST00000522101 334 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC4.57□□□□□ -1.68
HOXA1P49639 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC121758.1-202ENST00000556917 658 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC092332.1-201ENST00000563684 829 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXA1P49639 MIR4776-2-201ENST00000580204 80 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 MIR4260-201ENST00000583107 67 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC068768.2-201ENST00000602352 343 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AL160237.3-201ENST00000604114 1013 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 AL359513.1-201ENST00000614364 557 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 HTR1DP1-201ENST00000616500 888 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 MIR6823-201ENST00000622118 61 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXA1P49639 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 AC093775.1-201ENST00000624154 1868 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
HOXA1P49639 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXA1P49639 LINC01963-201ENST00000562038 3148 ntBASIC4.57□□□□□ -1.68
HOXA1P49639 QRSL1P1-201ENST00000400977 1540 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 DDX18P4-201ENST00000511690 1966 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 SNORD56.4-201ENST00000363883 71 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 AC234772.1-201ENST00000377927 937 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 HMGB1P10-201ENST00000395823 563 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 RPS26P13-201ENST00000419030 330 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 GTF2IP2-201ENST00000424290 697 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 MTND6P18-201ENST00000439477 513 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC005077.1-201ENST00000449226 375 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC044810.1-201ENST00000480271 711 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 RPS12P31-201ENST00000491419 398 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC005412.2-201ENST00000492004 341 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 RN7SL568P-201ENST00000493069 298 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 RN7SL57P-201ENST00000493687 290 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 RPS17P5-201ENST00000498293 408 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC122718.2-201ENST00000505325 591 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.56□□□□□ -1.68
HOXA1P49639 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC074255.1-201ENST00000511259 501 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 RN7SKP265-201ENST00000516448 223 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms